PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_15790V3.1.p
Common NamePHYPADRAFT_160233
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HB-other
Protein Properties Length: 388aa    MW: 42499.1 Da    PI: 4.5081
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_15790V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.11.1e-06321368754
                         --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox   7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         ++ke + + e++++++  ps +++e L + ++++ +++  WF  +Ra 
  Pp3c19_15790V3.1.p 321 LKKEHIATFERVYRNSTRPSNAMIENLVNLTHVPRKKILQWFDDKRAE 368
                         68999*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.42E-6319369IPR009057Homeodomain-like
CDDcd000863.71E-4320367No hitNo description
Gene3DG3DSA:1.10.10.602.0E-5320373IPR009057Homeodomain-like
PfamPF000462.2E-4321368IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MAAAARMLPA VAAASASASK PGLSREVAIS GSFGTCKGFC KLPWITTHGA SGLRQSAGRN  60
DVGAFAVGRR ASGFSGSGKK PRSGQKFPRK QRPPANPVLE DGDDDAALER AMEDLFAQLE  120
MDLESSVADS GDDEEFTEEE LALMAKELQD AFDEAGLEFE GLDDEESGPK TVDMFMKDGM  180
YSDDSVVHNR GEQEEEDEDE EGVEDEDEED EERMVPLEKW QLRKLAAAAE KGRRNVNVKI  240
LSAELGMDRA DVLSFLRNPP PELLLMSDEL ENEVAEASER AEAKVEKAPK VAAASRKQPA  300
PPLNPSGGPQ SPRSWHGSKR LKKEHIATFE RVYRNSTRPS NAMIENLVNL THVPRKKILQ  360
WFDDKRAENQ PNKSSFENAP KIDESAN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.4960.0gametophore| protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356799.10.0protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like
TrEMBLA0A2K1IYK60.0A0A2K1IYK6_PHYPA; Uncharacterized protein
STRINGPP1S20_112V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP69271618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.12e-32overexpressor of cationic peroxidase 3
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]