PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_14950V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 566aa    MW: 61469.1 Da    PI: 5.4765
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_14950V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57.1e-182372255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g
  Pp3c19_14950V3.1.p 23 KYRGVRRRP-WGRYAAEIRDPH----TrERRWLGTFDTAEQAAVAYDLAARSMRG 72
                        8********.**********73....25999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.19E-292379No hitNo description
PfamPF008475.4E-112372IPR001471AP2/ERF domain
PROSITE profilePS5103222.2862380IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-202380IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-282379IPR001471AP2/ERF domain
SMARTSM003802.2E-322386IPR001471AP2/ERF domain
PRINTSPR003675.4E-92435IPR001471AP2/ERF domain
PRINTSPR003675.4E-94662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MGARAMEGHK SGTKKAKKPT EGKYRGVRRR PWGRYAAEIR DPHTRERRWL GTFDTAEQAA  60
VAYDLAARSM RGLKARTNFV YPTHQTCLLS AALAASRASE QSEGDKFFGG LCGAKQSWNL  120
DWNTGLKFGG GLKVPTDTIG RFMLGSPVDT MMDPSSEPYK HMYESVERLA SAISDPRPRH  180
SASENGDLLK SSSCENLANE RRDPLKKKQC VVREVPLSRL CQSSERNSGG SSSLQTGRDC  240
VTVAVASPDQ HATCVGDYAA SCNRATVSYE STFSESGGPV RSPGGGHVTS GVSCASKFHE  300
DEAGTLAQVV SKYVCIDNGL RSAAPCLLDN NLVDSNQCFL STQVPYSEDS ATSSVSPLGD  360
TATSLDSATA RSPAQPLPTS VDSQMIFCGS SNSSTFSQKP DSLQSILPPS ASSTVNNMHQ  420
LSEDWPCSSS SQADIIRHPI LEQNSWNTDP SAESWSSLCD LPDAWQYYTD PGLVANEMED  480
ELIYVKRDLA MKNCEAVTTG WQSFLDDGCD ACFGGDSSIS YLSDNSSDEY LRYPYRGAHD  540
SLFHSLHDGH QLFPVLIEEP MRYMV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-2022791371Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403581.10.0uncharacterized protein LOC112295829
TrEMBLA0A2K1IYH80.0A0A2K1IYH8_PHYPA; Uncharacterized protein
STRINGPP1S20_184V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-30DORNROSCHEN-like