PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_11400V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 441aa    MW: 47548.8 Da    PI: 6.256
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_11400V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.15.1e-11374419655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L++l+P+      k  + +++L ++veY+ksLq
  Pp3c19_11400V3.1.p 374 SIAERVRRTRISERMKKLQDLVPNM----EKTTNTSDMLDETVEYVKSLQ 419
                         689*********************7....3669****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.03368418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-15371436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.32E-10372423No hitNo description
Gene3DG3DSA:4.10.280.102.2E-16373438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-8374419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-9374424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MGSVNEEISA IFQSSHASLS QGSLAGVMAP VTSPDMFASF SSHAAPPSSF QQGGGLVRTS  60
SMSQTALGNT LHNNRQHPSR GNPSSQRWPS MAGDEKWMLD AKGEVLEMHA SNSSFGAGFE  120
SFMPMISSAP PNGGLQRYHS APSTFLQALS EDAFTQLPPI GNSNMSGMFS EGGLAPITEQ  180
MDVERPSSGN SMNDFEQFLS PDSDFSRRAA MSALGKPENE TYSSIFPVSK SAGLVRQKSL  240
PVPALAQQNV PRQDAIEEHN SEESLSGTSE DNSLVNGLKA YLQDDGFARD ALTWPASPGT  300
SGGKRPRRFP GESETSSGSA ENSKSFRLNS QSNGLIRHMS LPTPTDGPAN QNSDDQYVQM  360
RARAKRGCAT HPRSIAERVR RTRISERMKK LQDLVPNMEK TTNTSDMLDE TVEYVKSLQM  420
KVKELTETIA QLKAATQMSP *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.181580.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356478.10.0transcription factor bHLH128-like
RefseqXP_024356479.10.0transcription factor bHLH128-like
RefseqXP_024356480.10.0transcription factor bHLH128-like
RefseqXP_024356481.10.0transcription factor bHLH128-like
RefseqXP_024356482.10.0transcription factor bHLH128-like
TrEMBLA0A2K1IY320.0A0A2K1IY32_PHYPA; Uncharacterized protein
STRINGPP1S272_10V6.30.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.18e-33bHLH family protein