PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c19_10050V3.2.p | ||||||||
Common Name | PHYPADRAFT_168390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 22935.8 Da PI: 9.7768 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.5 | 7.6e-14 | 105 | 147 | 2 | 47 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 ++GVr ++ ++Wv eIr s ++++++lg++ t+eeAa+a++ Pp3c19_10050V3.2.p 105 IFRGVRHRPELNKWVTEIRPTS---QKRKIWLGTYETPEEAARAYD 147 58***************99942...35******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.57E-16 | 104 | 151 | No hit | No description |
Pfam | PF00847 | 8.2E-10 | 105 | 147 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-14 | 105 | 168 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.751 | 105 | 165 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-13 | 105 | 161 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-19 | 106 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MNLTISSILE QGRPKSKNWW DPCGGGKARE QGLQLPSKID SARVKNEVDE SKSESSQEEE 60 RKGMRLAARD DSGQNALKFR NIDLNKVPSA WDSDDVSVGT GDTTIFRGVR HRPELNKWVT 120 EIRPTSQKRK IWLGTYETPE EAARAYDVGI FYTKKKIPYN FEDSPQQLQL YPIPPELPWE 180 SFAALVKQRA TSAAKRARVP SSG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.5568 | 0.0 | gametophore| protonema| sporophyte |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024356487.1 | 1e-149 | ethylene-responsive transcription factor ERF110-like | ||||
Refseq | XP_024356488.1 | 1e-149 | ethylene-responsive transcription factor ERF110-like | ||||
TrEMBL | A0A2K1IXX6 | 1e-147 | A0A2K1IXX6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S174_79V6.1 | 1e-148 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-13 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c19_10050V3.2.p |
Entrez Gene | 5937459 |
Publications ? help Back to Top | |||
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