PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_9360V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HSF
Protein Properties Length: 418aa    MW: 47038.3 Da    PI: 8.0862
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_9360V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.6e-34261172102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d++++e++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+++l
  Pp3c18_9360V3.3.p  26 FLTKTYHLVSDPSTNEIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDFFRRGERHL 108
                        9*****************************************************************99.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i r+k 
  Pp3c18_9360V3.3.p 109 LCEIYRRKA 117
                        ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.6E-3719110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5922115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-3323115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MSLSFNNSEA GCMLFYDCHR SVPAPFLTKT YHLVSDPSTN EIVSWGEDDT TFVVWRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFANDF FRRGERHLLC EIYRRKALQP  120
ASCSGSAKQS RSLSPSTSIE EQAWSPVSSP MSSPLPVIVE TQHLTPPVMS ISDENERLRK  180
DNNLLLSEIS RLRRLYEETI YMIQHQFKGL TSDLTSFTSR IGASSQSLDH SVPSTTVSGD  240
AAMQHRNLNP LPLASRMDSE IYELSVQVRT THQQYCKAGP HPAFVERRPQ AEIINTVDSK  300
LLTGPKLTTA HALSNPSNNP VKLFGVPLHS QVAGTEPVKM IRREPVAVAA AGMKRLQPDS  360
SWDSVSDISE MNVPLRDQVS LRPPPRKCLR PESELRPSTV QAPWLQICAT RDEGVYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-222111525129Heat shock factor protein 1
5d5v_B5e-222111525129Heat shock factor protein 1
5d5v_D5e-222111525129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403265.10.0heat stress transcription factor B-4-like
TrEMBLA0A2K1J0G70.0A0A2K1J0G7_PHYPA; Uncharacterized protein
STRINGPP1S19_153V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-61heat shock transcription factor B4