PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c18_9360V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | HSF | ||||||||
Protein Properties | Length: 418aa MW: 47038.3 Da PI: 8.0862 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109 | 3.6e-34 | 26 | 117 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+y++++d++++e++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F++g+++l Pp3c18_9360V3.2.p 26 FLTKTYHLVSDPSTNEIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDFFRRGERHL 108 9*****************************************************************99.........*************** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 l++i r+k Pp3c18_9360V3.2.p 109 LCEIYRRKA 117 ******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.6E-37 | 19 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.6E-59 | 22 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.04E-33 | 23 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.2E-31 | 26 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-19 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-19 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 65 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-19 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MSLSFNNSEA GCMLFYDCHR SVPAPFLTKT YHLVSDPSTN EIVSWGEDDT TFVVWRPPEF 60 ARDLLPNYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFANDF FRRGERHLLC EIYRRKALQP 120 ASCSGSAKQS RSLSPSTSIE EQAWSPVSSP MSSPLPVIVE TQHLTPPVMS ISDENERLRK 180 DNNLLLSEIS RLRRLYEETI YMIQHQFKGL TSDLTSFTSR IGASSQSLDH SVPSTTVSGD 240 AAMQHRNLNP LPLASRMDSE IYELSVQVRT THQQYCKAGP HPAFVERRPQ AEIINTVDSK 300 LLTGPKLTTA HALSNPSNNP VKLFGVPLHS QVAGTEPVKM IRREPVAVAA AGMKRLQPDS 360 SWDSVSDISE MNVPLRDQVS LRPPPRKCLR PESELRPSTV QAPWLQICAT RDEGVYI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-22 | 21 | 115 | 25 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-22 | 21 | 115 | 25 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-22 | 21 | 115 | 25 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00187 | DAP | Transfer from AT1G46264 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024403265.1 | 0.0 | heat stress transcription factor B-4-like | ||||
TrEMBL | A0A2K1J0G7 | 0.0 | A0A2K1J0G7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S19_153V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 3e-61 | heat shock transcription factor B4 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c18_9360V3.2.p |