PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_8920V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family SRS
Protein Properties Length: 525aa    MW: 56415 Da    PI: 7.7774
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_8920V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702210.83.4e-653054662153
             DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstkls 92 
                        ++g+++Cq+CGnqakkdC+++RCRtCCksr+fdCathvkstWvpa+krrerq+++aaa++     + + +skr r+   ++ + a++s++++
  Pp3c18_8920V3.3.p 305 GHGSTACQECGNQAKKDCSFQRCRTCCKSRDFDCATHVKSTWVPASKRRERQAAEAAAAAA---GQPRPKSKRARTItLAAPAGATTSMTTT 393
                        57899**********************************************9988887433...3344555555554367788899999999 PP

             DUF702  93 saeskkeletss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                        sa+s++ ++++s            lP+ev+++a+f+cvrv++v+dge+e+aYq++v+igGh+fkG+LydqGl+
  Pp3c18_8920V3.3.p 394 SANSPRGSDINSghpsqpaqgrggLPPEVRAQALFKCVRVTGVEDGENECAYQATVKIGGHIFKGLLYDQGLD 466
                        ***********9***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.3E-58308466IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.1E-25311352IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.8E-26418465IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MLLASVAPAV TTGGGGGEGG VTTAGRVEGG PLKDGDLSLG FGYTPRVPVS LSDAVPPGSH  60
PGLWGRPTAT YSFRDAGAAL GVGLAGTQRE IFRDILSRGE EFGPAYAEVL KLDSERERAI  120
QQQQQHHQQH HQQQHHQQHH HQHQHQQQQQ QHHQQQQQQH HQQQQQQHHQ QQQQQHHQQQ  180
QHHQHQQQSL QGVQRQVNIV GEGPNYGDTG RGEGESSSSG SVDKGGHQGD QAGMEPWAAR  240
TLRDDVVRVM DVQPLNEQPP SRQVLQHNPQ AAQPNVDAVP QVHQLQLDAT KHKVPHAPQV  300
PQVMGHGSTA CQECGNQAKK DCSFQRCRTC CKSRDFDCAT HVKSTWVPAS KRRERQAAEA  360
AAAAAGQPRP KSKRARTITL AAPAGATTSM TTTSANSPRG SDINSGHPSQ PAQGRGGLPP  420
EVRAQALFKC VRVTGVEDGE NECAYQATVK IGGHIFKGLL YDQGLDLAQQ AVTSNPSELQ  480
LGGGGAGGVR SNLPSSSPLL DPSGMYAGNP LLGGEDSRVA PWFT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.167840.0protonema
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9534191e-105AY953419.1 Physcomitrella patens putative zinc finger protein (SHI) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402501.10.0protein LATERAL ROOT PRIMORDIUM 1-like isoform X1
TrEMBLA9RNV10.0A9RNV1_PHYPA; Predicted protein
STRINGPP1S19_109V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13131549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-36Lateral root primordium (LRP) protein-related