PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c18_8920V3.2.p

Common Name

PHYPADRAFT_204223

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

SRS

Protein Properties

Length: 265aa MW: 28225.9 Da PI: 8.66

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c18_8920V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	185.1	2.8e-57	72	206	2	153
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 ++g+++Cq+CGnqakkdC+++RCRtCCksr+fdCathvkstWvpa+krrerq+++aaa a+a + r++++ +++ + + Pp3c18_8920V3.2.p 72 GHGSTACQECGNQAKKDCSFQRCRTCCKSRDFDCATHVKSTWVPASKRRERQAAEAAA--------AAAGQPRPKSK--RAR--TI-----T 146 57899********************************************9888775........33444455543..111..11.....1 PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++ lP+ev+++a+f+cvrv++v+dge+e+aYq++v+igGh+fkG+LydqGl+ Pp3c18_8920V3.2.p 147 LAAPAAQGRGGLPPEVRAQALFKCVRVTGVEDGENECAYQATVKIGGHIFKGLLYDQGLD 206 122334455679********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.2E-56	75	206	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.0E-26	78	119	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.7E-27	158	205	IPR006511	Lateral Root Primordium type 1, C-terminal

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MEPWAARTLR DDVVRVMDVQ PLNEQPPSRQ VLQHNPQAAQ PNVDAVPQVH QLQLDATKHK 60 VPHAPQVPQV MGHGSTACQE CGNQAKKDCS FQRCRTCCKS RDFDCATHVK STWVPASKRR 120 ERQAAEAAAA AAGQPRPKSK RARTITLAAP AAQGRGGLPP EVRAQALFKC VRVTGVEDGE 180 NECAYQATVK IGGHIFKGLL YDQGLDLAQQ AVTSNPSELQ LGGGGAGGVR SNLPSSSPLL 240 DPSGMYAGNP LLGGEDSRVA PWFT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.16784	0.0	protonema

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269\|PubMed:7647564}.
Uniprot	TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269\|PubMed:7647564}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY953419	1e-103	AY953419.1 Physcomitrella patens putative zinc finger protein (SHI) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024402502.1	0.0	protein LATERAL ROOT PRIMORDIUM 1-like isoform X2
Swissprot	Q94CK9	1e-45	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A9RNV1	1e-175	A9RNV1_PHYPA; Predicted protein
STRING	PP1S19_109V6.1	1e-176	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	2e-36	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Pp3c18_8920V3.2.p
Entrez Gene	5918893

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]