PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c18_8920V3.1.p | ||||||||
Common Name | PHYPADRAFT_204223 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 292aa MW: 30867.7 Da PI: 8.6611 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 212.7 | 8.7e-66 | 72 | 233 | 2 | 153 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstkls 92 ++g+++Cq+CGnqakkdC+++RCRtCCksr+fdCathvkstWvpa+krrerq+++aaa++ + + +skr r+ ++ + a++s++++ Pp3c18_8920V3.1.p 72 GHGSTACQECGNQAKKDCSFQRCRTCCKSRDFDCATHVKSTWVPASKRRERQAAEAAAAAA---GQPRPKSKRARTItLAAPAGATTSMTTT 160 57899**********************************************9988887433...3344555555554367788899999999 PP DUF702 93 saeskkeletss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 sa+s++ ++++s lP+ev+++a+f+cvrv++v+dge+e+aYq++v+igGh+fkG+LydqGl+ Pp3c18_8920V3.1.p 161 SANSPRGSDINSghpsqpaqgrggLPPEVRAQALFKCVRVTGVEDGENECAYQATVKIGGHIFKGLLYDQGLD 233 ***********9***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.6E-58 | 75 | 233 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 9.3E-26 | 78 | 119 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 7.9E-27 | 185 | 232 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 292 aa Download sequence Send to blast |
MEPWAARTLR DDVVRVMDVQ PLNEQPPSRQ VLQHNPQAAQ PNVDAVPQVH QLQLDATKHK 60 VPHAPQVPQV MGHGSTACQE CGNQAKKDCS FQRCRTCCKS RDFDCATHVK STWVPASKRR 120 ERQAAEAAAA AAGQPRPKSK RARTITLAAP AGATTSMTTT SANSPRGSDI NSGHPSQPAQ 180 GRGGLPPEVR AQALFKCVRV TGVEDGENEC AYQATVKIGG HIFKGLLYDQ GLDLAQQAVT 240 SNPSELQLGG GGAGGVRSNL PSSSPLLDPS GMYAGNPLLG GEDSRVAPWF T* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppa.16784 | 0.0 | protonema |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY953419 | 1e-103 | AY953419.1 Physcomitrella patens putative zinc finger protein (SHI) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024402501.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 | ||||
TrEMBL | A9RNV1 | 0.0 | A9RNV1_PHYPA; Predicted protein | ||||
STRING | PP1S19_109V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G12330.2 | 4e-38 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c18_8920V3.1.p |
Entrez Gene | 5918893 |
Publications ? help Back to Top | |||
---|---|---|---|
|