PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_8710V3.1.p
Common NamePHYPADRAFT_160146
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 428aa    MW: 47242.9 Da    PI: 6.8213
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_8710V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.65.2e-12201242346
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rW +e+ +l+++a +q+G++ +++I + ++ gRt+kq+ks++ +
  Pp3c18_8710V3.1.p 201 RWKQEDTDLFYKALEQFGTD-FELIQNLFP-GRTRKQVKSKFKN 242
                        9*******************.*********.**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.4E-29192277No hitNo description
PROSITE profilePS512939.735197248IPR017884SANT domain
SMARTSM007174.5E-9198246IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-7198242IPR009057Homeodomain-like
SuperFamilySSF466891.27E-10200248IPR009057Homeodomain-like
CDDcd001671.79E-8201242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MADEEAVATA EEADGDEECE DMARNQPLES EPPVSVLKKA RPIGAARKRK IVHRTRSGKR  60
KDVETKTVSL KKMKEAVSMD LSDPSQLTMK EIIRRAEAIE RAKAREEAAK KGKGKDKKGA  120
GTTTASKDRN TPADQDMPAQ SASILTPQVT IVNGRIVINQ QSLVVGAQAS TREDTNTYQR  180
VEEDRPKLNY NSYSNRTPVE RWKQEDTDLF YKALEQFGTD FELIQNLFPG RTRKQVKSKF  240
KNEERLNPLR LSDALGHKTQ DQSHHYRAIL EMIKTEKPAA DSDEMLLESL LQPVVTDERA  300
SDQPLQTQAS TSGDKVHAED NVDVAMNTVV LDKVKPDDVT APASELIDST AAVLPQSEVE  360
TITVKDDPPA SEAPETLSSH QNKSKASGNP LGSYGKEPLS KNPRGSYGNM SRNPLGSYKK  420
NPLGMYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cnb_S1e-14153288369504Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnc_S1e-14153288369504Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnd_S1e-14153288369504Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnf_S1e-14153288369504Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401733.10.0transcription factor TFIIIB component B''-like
TrEMBLA0A2K1J0E10.0A0A2K1J0E1_PHYPA; Uncharacterized protein
STRINGPP1S19_81V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8075913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.22e-22MYB_related family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]