PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_7640V3.7.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 838aa    MW: 94492.2 Da    PI: 5.0288
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_7640V3.7.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix34.55.2e-11121204280
           trihelix   2 WtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                        W   e l+L+ + +e  e++++ +      ++ +W ++ ++++ + ++rs+  C ekw +l+ ++k++k+ e++  ++++s + 
  Pp3c18_7640V3.7.p 121 WDVLEMLVLVSGMKEYAETVGDHSledhvNEQEKWHSIENYCWGQLVQRSALDCHEKWLSLSAEFKRVKDFESSMVQDQKSYWE 204
                        77778899999999888888876545555999******************************************9777776765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.47113182IPR017877Myb-like domain
PfamPF138372.7E-6120205No hitNo description
PROSITE profilePS508089.82348424IPR003656Zinc finger, BED-type
SuperFamilySSF530982.96E-13544814IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MENGVNVEPR AEDELGRGLE DVIATTEELE MEVRDDKMQE LHVGGLSSHG HAHLEHEGDH  60
AGESIHDAMM VESRGDIGVE HRDPKAMEEE EDHMGLDEDT RIGGGEPDKG QDNKNYKEGP  120
WDVLEMLVLV SGMKEYAETV GDHSLEDHVN EQEKWHSIEN YCWGQLVQRS ALDCHEKWLS  180
LSAEFKRVKD FESSMVQDQK SYWEMTYDER NNSQLPGDFS QEVYNMLWQW DDRDRIGEVG  240
TSLILDDEIN VKEQSPFGSM VRTRKRTDRG ESQISRKASR GEAGMEATFL GSQLMMFGNQ  300
QVDMGGEGTG SLALVEPTEE IQASEDDEVW NAQLALLRAN QQFWAPHGRA SATWAFYVVN  360
DNSEPDSGRP QQMRCAICHP AQQEHRPNSA TRVRKGVVTY NKQHGTTSMK KHVAQEHGDI  420
FTKYKATRKP SVMTRAEGQH SRRMKKDPSP SVLSDFLGNH SSSKKSDPAQ ERLREDLVLY  480
VAKGCHPISM IENVWLKRLL MNRQCGRLNF PDGRQLVDEV VPRMVSQTME KHVLPALRGC  540
VSATVTFDLW MVRRGVNTIA LVVHFINESW ETCRVTIGVF EAPESAGEEL ALEVKDLFSS  600
FNLAEKIIAF VVNDDDPSLR SLAEALSKQV SCSPLQLPEP YAGTCFGHVL FKACENATTD  660
EKGCDDSRAF SIEATVSTLK ETISWTTRSA KTRHQWMKAC FDVGLQPRKL RAPMMGRFAS  720
KVILCQEALD YQHALSLYYG SQSNDMYIEV PSVETWAVAK AVTDALTPVL QQCIMNQSKA  780
YWLLSDAIAT ALSLCIQLHR ERLPNRSLAD PKLDPSFEAA LDVSLDRMRQ ELQMTRQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402692.10.0zinc finger BED domain-containing protein 4-like isoform X1
RefseqXP_024402693.10.0zinc finger BED domain-containing protein 4-like isoform X1
RefseqXP_024402694.10.0zinc finger BED domain-containing protein 4-like isoform X1
TrEMBLA0A2K1J0A20.0A0A2K1J0A2_PHYPA; Uncharacterized protein
STRINGPP1S299_56V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.16e-15Trihelix family protein