PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c18_7640V3.4.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 1029aa MW: 116243 Da PI: 5.0482

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c18_7640V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.1	6.9e-11	121	204	2	80
trihelix 2 WtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 W e l+L+ + +e e++++ + ++ +W ++ ++++ + ++rs+ C ekw +l+ ++k++k+ e++ ++++s + Pp3c18_7640V3.4.p 121 WDVLEMLVLVSGMKEYAETVGDHSledhvNEQEKWHSIENYCWGQLVQRSALDCHEKWLSLSAEFKRVKDFESSMVQDQKSYWE 204 77778899999999888888876545555999******************************************9777776765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.47	113	182	IPR017877	Myb-like domain
Pfam	PF13837	3.5E-6	120	205	No hit	No description
PROSITE profile	PS50808	9.82	348	424	IPR003656	Zinc finger, BED-type
SuperFamily	SSF53098	6.45E-31	544	982	IPR012337	Ribonuclease H-like domain
Pfam	PF05699	6.5E-9	912	980	IPR008906	HAT, C-terminal dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1029 aa Download sequence Send to blast
MENGVNVEPR AEDELGRGLE DVIATTEELE MEVRDDKMQE LHVGGLSSHG HAHLEHEGDH 60 AGESIHDAMM VESRGDIGVE HRDPKAMEEE EDHMGLDEDT RIGGGEPDKG QDNKNYKEGP 120 WDVLEMLVLV SGMKEYAETV GDHSLEDHVN EQEKWHSIEN YCWGQLVQRS ALDCHEKWLS 180 LSAEFKRVKD FESSMVQDQK SYWEMTYDER NNSQLPGDFS QEVYNMLWQW DDRDRIGEVG 240 TSLILDDEIN VKEQSPFGSM VRTRKRTDRG ESQISRKASR GEAGMEATFL GSQLMMFGNQ 300 QVDMGGEGTG SLALVEPTEE IQASEDDEVW NAQLALLRAN QQFWAPHGRA SATWAFYVVN 360 DNSEPDSGRP QQMRCAICHP AQQEHRPNSA TRVRKGVVTY NKQHGTTSMK KHVAQEHGDI 420 FTKYKATRKP SVMTRAEGQH SRRMKKDPSP SVLSDFLGNH SSSKKSDPAQ ERLREDLVLY 480 VAKGCHPISM IENVWLKRLL MNRQCGRLNF PDGRQLVDEV VPRMVSQTME KHVLPALRGC 540 VSATVTFDLW MVRRGVNTIA LVVHFINESW ETCRVTIGVF EAPESAGEEL ALELPEPYAG 600 TCFGHVLFKA CENATTDEKG CDDSRAFSIE ATVSTLKETI SWTTRSAKTR HQWMKACFDV 660 GLQPRKLRAP MMGRFASKVI LCQEALDYQH ALSLYYGSQS NDMYIEVPSV ETWAVAKAVT 720 DALTPVLQQC IMNQSKAYWL LSDAIATALS LCIQLHRERL PNRSLADPKL DPSFEAALDV 780 SLDRMRQEVM NTLAPFLTFT VEYSAKHAHN MLVLMLDPRY KGLSLVKDYV GKNLALQVVA 840 EVDKQALLPC LVTVFKHLNP SSVENVPTLS PTSKDSFDEN SLFGSTASND EAIVGHLKAE 900 LSFFRRLHID PKECENPLAW WKVREVQFPN VGFLARHILG IVGSQVETER IFSVVGLISA 960 IRRRHLCTDN LDKLVLIREN WEEDSRSGSE EPRTGRKMEA RLHDYLLAEE NILEENEDLV 1020 FDAGLFDE*

Sequence ? help Back to Top

Protein Sequence Length: 1029 aa Download sequence Send to blast

MENGVNVEPR AEDELGRGLE DVIATTEELE MEVRDDKMQE LHVGGLSSHG HAHLEHEGDH  60
AGESIHDAMM VESRGDIGVE HRDPKAMEEE EDHMGLDEDT RIGGGEPDKG QDNKNYKEGP  120
WDVLEMLVLV SGMKEYAETV GDHSLEDHVN EQEKWHSIEN YCWGQLVQRS ALDCHEKWLS  180
LSAEFKRVKD FESSMVQDQK SYWEMTYDER NNSQLPGDFS QEVYNMLWQW DDRDRIGEVG  240
TSLILDDEIN VKEQSPFGSM VRTRKRTDRG ESQISRKASR GEAGMEATFL GSQLMMFGNQ  300
QVDMGGEGTG SLALVEPTEE IQASEDDEVW NAQLALLRAN QQFWAPHGRA SATWAFYVVN  360
DNSEPDSGRP QQMRCAICHP AQQEHRPNSA TRVRKGVVTY NKQHGTTSMK KHVAQEHGDI  420
FTKYKATRKP SVMTRAEGQH SRRMKKDPSP SVLSDFLGNH SSSKKSDPAQ ERLREDLVLY  480
VAKGCHPISM IENVWLKRLL MNRQCGRLNF PDGRQLVDEV VPRMVSQTME KHVLPALRGC  540
VSATVTFDLW MVRRGVNTIA LVVHFINESW ETCRVTIGVF EAPESAGEEL ALELPEPYAG  600
TCFGHVLFKA CENATTDEKG CDDSRAFSIE ATVSTLKETI SWTTRSAKTR HQWMKACFDV  660
GLQPRKLRAP MMGRFASKVI LCQEALDYQH ALSLYYGSQS NDMYIEVPSV ETWAVAKAVT  720
DALTPVLQQC IMNQSKAYWL LSDAIATALS LCIQLHRERL PNRSLADPKL DPSFEAALDV  780
SLDRMRQEVM NTLAPFLTFT VEYSAKHAHN MLVLMLDPRY KGLSLVKDYV GKNLALQVVA  840
EVDKQALLPC LVTVFKHLNP SSVENVPTLS PTSKDSFDEN SLFGSTASND EAIVGHLKAE  900
LSFFRRLHID PKECENPLAW WKVREVQFPN VGFLARHILG IVGSQVETER IFSVVGLISA  960
IRRRHLCTDN LDKLVLIREN WEEDSRSGSE EPRTGRKMEA RLHDYLLAEE NILEENEDLV  1020
FDAGLFDE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024402695.1	0.0	uncharacterized protein LOC112295398 isoform X2
TrEMBL	A0A2K1J0A2	0.0	A0A2K1J0A2_PHYPA; Uncharacterized protein
STRING	PP1S299_56V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-14	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pp3c18_7640V3.4.p