PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c18_7640V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 1072aa MW: 120921 Da PI: 5.0041 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 34.1 | 7.2e-11 | 121 | 204 | 2 | 80 |
trihelix 2 WtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 W e l+L+ + +e e++++ + ++ +W ++ ++++ + ++rs+ C ekw +l+ ++k++k+ e++ ++++s + Pp3c18_7640V3.1.p 121 WDVLEMLVLVSGMKEYAETVGDHSledhvNEQEKWHSIENYCWGQLVQRSALDCHEKWLSLSAEFKRVKDFESSMVQDQKSYWE 204 77778899999999888888876545555999******************************************9777776765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.47 | 113 | 182 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 3.7E-6 | 120 | 205 | No hit | No description |
PROSITE profile | PS50808 | 9.82 | 348 | 424 | IPR003656 | Zinc finger, BED-type |
SuperFamily | SSF53098 | 2.12E-35 | 544 | 1025 | IPR012337 | Ribonuclease H-like domain |
Pfam | PF05699 | 6.9E-9 | 955 | 1023 | IPR008906 | HAT, C-terminal dimerisation domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1072 aa Download sequence Send to blast |
MENGVNVEPR AEDELGRGLE DVIATTEELE MEVRDDKMQE LHVGGLSSHG HAHLEHEGDH 60 AGESIHDAMM VESRGDIGVE HRDPKAMEEE EDHMGLDEDT RIGGGEPDKG QDNKNYKEGP 120 WDVLEMLVLV SGMKEYAETV GDHSLEDHVN EQEKWHSIEN YCWGQLVQRS ALDCHEKWLS 180 LSAEFKRVKD FESSMVQDQK SYWEMTYDER NNSQLPGDFS QEVYNMLWQW DDRDRIGEVG 240 TSLILDDEIN VKEQSPFGSM VRTRKRTDRG ESQISRKASR GEAGMEATFL GSQLMMFGNQ 300 QVDMGGEGTG SLALVEPTEE IQASEDDEVW NAQLALLRAN QQFWAPHGRA SATWAFYVVN 360 DNSEPDSGRP QQMRCAICHP AQQEHRPNSA TRVRKGVVTY NKQHGTTSMK KHVAQEHGDI 420 FTKYKATRKP SVMTRAEGQH SRRMKKDPSP SVLSDFLGNH SSSKKSDPAQ ERLREDLVLY 480 VAKGCHPISM IENVWLKRLL MNRQCGRLNF PDGRQLVDEV VPRMVSQTME KHVLPALRGC 540 VSATVTFDLW MVRRGVNTIA LVVHFINESW ETCRVTIGVF EAPESAGEEL ALEVKDLFSS 600 FNLAEKIIAF VVNDDDPSLR SLAEALSKQV SCSPLQLPEP YAGTCFGHVL FKACENATTD 660 EKGCDDSRAF SIEATVSTLK ETISWTTRSA KTRHQWMKAC FDVGLQPRKL RAPMMGRFAS 720 KVILCQEALD YQHALSLYYG SQSNDMYIEV PSVETWAVAK AVTDALTPVL QQCIMNQSKA 780 YWLLSDAIAT ALSLCIQLHR ERLPNRSLAD PKLDPSFEAA LDVSLDRMRQ EVMNTLAPFL 840 TFTVEYSAKH AHNMLVLMLD PRYKGLSLVK DYVGKNLALQ VVAEVDKQAL LPCLVTVFKH 900 LNPSSVENVP TLSPTSKDSF DENSLFGSTA SNDEAIVGHL KAELSFFRRL HIDPKECENP 960 LAWWKVREVQ FPNVGFLARH ILGIVGSQVE TERIFSVVGL ISAIRRRHLC TDNLDKLVLI 1020 RENWEEDSRS GSEEPRTGRK MEARLHDYLL AEENILEENE DLVFDAGLFD E* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024402692.1 | 0.0 | zinc finger BED domain-containing protein 4-like isoform X1 | ||||
Refseq | XP_024402693.1 | 0.0 | zinc finger BED domain-containing protein 4-like isoform X1 | ||||
Refseq | XP_024402694.1 | 0.0 | zinc finger BED domain-containing protein 4-like isoform X1 | ||||
TrEMBL | A0A2K1J0A2 | 0.0 | A0A2K1J0A2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S299_56V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33550.1 | 8e-15 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c18_7640V3.1.p |