PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_3900V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 1207aa    MW: 135713 Da    PI: 6.6009
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_3900V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.97.9e-1110251081155
                AP2    1 sgykGVrwdkkrgrWvAeIrdpse..ng.krkrfslgkfgtaeeAakaaiaarkkleg 55  
                         s+y+GV++++ +gr++A+++d s+   g   +r + g +  +e+Aaka++ a++k++g
  Pp3c18_3900V3.2.p 1025 SKYRGVTRHRHTGRFEAHLWDNSKvkLGlA-RRGRQGAYTDEEQAAKAHDLAALKYWG 1081
                         89*******************655444443.55566777777**************98 PP
2AP248.22.7e-1511241172152
                AP2    1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkk 52  
                         s+y+GV+++++ grW+A+I        +  k+++lg+++t+eeAa a+++a+  
  Pp3c18_3900V3.2.p 1124 SKYRGVTRHHQEGRWEARIGRH-----SgaKYHYLGTYDTEEEAAVAYDRAAVL 1172
                         89****************9995.....346*********************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-1110251091IPR016177DNA-binding domain
PfamPF008471.2E-710251081IPR001471AP2/ERF domain
CDDcd000184.70E-1510251091No hitNo description
Gene3DG3DSA:3.30.730.101.9E-1110261089IPR001471AP2/ERF domain
SMARTSM003806.7E-1510261095IPR001471AP2/ERF domain
PROSITE profilePS5103216.37110261089IPR001471AP2/ERF domain
PfamPF008471.7E-911241170IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1711241185IPR016177DNA-binding domain
CDDcd000185.18E-2311241185No hitNo description
Gene3DG3DSA:3.30.730.105.6E-1811251183IPR001471AP2/ERF domain
SMARTSM003801.1E-2711251189IPR001471AP2/ERF domain
PROSITE profilePS5103217.21411251183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1207 aa     Download sequence    Send to blast
MGVVEERLDR FVSRTVDMEG AVQDQSETET RNGMETVLQR IRATPWERND TKNRIELGTV  60
PAESLNSTHA YAVEERQASD SITVQWATCV APNLATFEER NTVGISGQYE KTAEIIQPSL  120
CALGSGVYLK QYRSASEKDV NDNKLELYAL DNLDASDLCV SELADHQNKF IILPEWPNCY  180
QARGQETFIA PPTDSIINST TRRVAHQIEC EPVESDIEVT EAHRLFLADE LLSADHKDYD  240
LYMFDALKPT SPPLPSQVQR KSPALVVGQE IRITLELFNE GQGVLEEFDY PPLPKQPSMG  300
QSSSSRCTEK RGIDIDESEG ISSQALRRKY LDSEHFEAHS RVLSTSSLQN PDSGQIDINS  360
AFRAEVIDED EFEEHRSLEQ QSEGRIENGI RFLSHYKMVK EHENGNEVKF GTTVQDIDHQ  420
NNSKANGDPC VLVGNYDNLG ELEDEVLEKT MGWFPVEESC NEGNDPTLSV RWILDEPPTA  480
ADLPHLESLL EISPSKFWSP ESESGKRTSV HFGYLCRSES SQSPHSIQYF LNDSPASSPE  540
VTRTIFSGVP GTINSSKEPK HHCSQKRPAM HGAIQKIYSP CMDTAIPWTW RESMETNMKS  600
PSLGSGRKFA QVQICVPHVS PGFSEDKRGN LTSREQNVIS TPTQDHTHQE TGCLSNFTKS  660
DGAVHRLMSQ HGKNLVVDFL KVGPTTQERI EAIRNDTELR DTFVPPSSKL WVQVENPTMP  720
SDNMRDQFSA RLSDKEGTNA SSSLELQIPQ GNRLTGTADA PLQPLSSPVK PEVVLQVHKN  780
CKRRRHAELL PLADISNHPN LAARLRDSLH EKLESQLEFP NTLLELLNDE RPVSEQCPQN  840
LAPGNATWSS PGVPRVSRKR SSRVTTPKDM RPRVSNMLID DKMLQSATET PIKDHYTCKR  900
GKKITKSAFK ELQTFPRNVK LRLLMPDPAS CENDMIEMTN QEGRNVKSPI LTKAVKPLRL  960
IKTSPAKGYS WTRIRTTPKS NAVVRCETNI EESVTGEERH EVKGKSLSKG SPDIETNKIA  1020
VLRSSKYRGV TRHRHTGRFE AHLWDNSKVK LGLARRGRQG AYTDEEQAAK AHDLAALKYW  1080
GPGVHTNFPP SLYEEELKTM KNLTKEDYIL LLRRKSPGFT RGISKYRGVT RHHQEGRWEA  1140
RIGRHSGAKY HYLGTYDTEE EAAVAYDRAA VLHRGPNAVT NFDISNYIKR KTKNPKTEIT  1200
VCPPQM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403104.10.0uncharacterized protein LOC112295569
TrEMBLA0A2K1IZT80.0A0A2K1IZT8_PHYPA; Uncharacterized protein
STRINGPP1S17_137V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-66AP2 family protein