PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_3900V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 1164aa    MW: 130806 Da    PI: 6.6698
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_3900V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.42.1e-149791038155
                AP2    1 sgykGVrwdkkrgrWvAeIrdpse..ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55  
                         s+y+GV++++ +gr++A+++d s+   g  +r ++++lg +  +e+Aaka++ a++k++g
  Pp3c18_3900V3.1.p  979 SKYRGVTRHRHTGRFEAHLWDNSKvkLGlaRRgRQVYLGAYTDEEQAAKAHDLAALKYWG 1038
                         89*******************777677798557*************************98 PP
2AP248.22.6e-1510811129152
                AP2    1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkk 52  
                         s+y+GV+++++ grW+A+I        +  k+++lg+++t+eeAa a+++a+  
  Pp3c18_3900V3.1.p 1081 SKYRGVTRHHQEGRWEARIGRH-----SgaKYHYLGTYDTEEEAAVAYDRAAVL 1129
                         89****************9995.....346*********************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-109791038IPR001471AP2/ERF domain
CDDcd000183.61E-179791048No hitNo description
SuperFamilySSF541715.43E-149791048IPR016177DNA-binding domain
PROSITE profilePS5103218.0839801046IPR001471AP2/ERF domain
SMARTSM003801.8E-219801052IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-159801046IPR001471AP2/ERF domain
PfamPF008471.6E-910811127IPR001471AP2/ERF domain
CDDcd000184.90E-2310811142No hitNo description
SuperFamilySSF541711.05E-1710811142IPR016177DNA-binding domain
PROSITE profilePS5103217.21410821140IPR001471AP2/ERF domain
SMARTSM003801.1E-2710821146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-1810821140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1164 aa     Download sequence    Send to blast
MGVVEERLDR FVSRTVDMEG AVQDQSETET RNGMETVLQR IRATPWERND TKNRIELGTV  60
PAESLNSTHA YAVEERQASD SITVQWATCV APNLATFEER NTVGISGQYE KTAEIIQPSL  120
CALGSGVYLK QYRSASEKDV NDNKLELYAL DNLDASDLCV SELADHQNKF IILPEWPNCY  180
QARGQETFIA PPTDSIINST TRRVAHQIEC EPVESDIEVT EAHRLFLADE LLSAGQGVLE  240
EFDYPPLPKQ PSMGQSSSSR CTEKRGIDID ESEGISSQAL RRKYLDSEHF EAHSRVLSTS  300
SLQNPDSGQI DINSAFRAEV IDEDEFEEHR SLEQQSEGRI ENGIRFLSHY KMVKEHENGN  360
EVKFGTTVQD IDHQNNSKAN GDPCVLVGNY DNLGELEDEV LEKTMGWFPV EESCNEGNDP  420
TLSVRWILDE PPTAADLPHL ESLLEISPSK FWSPESESGK RTSVHFGYLC RSESSQSPHS  480
IQYFLNDSPA SSPEVTRTIF SGVPGTINSS KEPKHHCSQK RPAMHGAIQK IYSPCMDTAI  540
PWTWRESMET NMKSPSLGSG RKFAQVQICV PHVSPGFSED KRGNLTSREQ NVISTPTQDH  600
THQETGCLSN FTKSDGAVHR LMSQHGKNLV VDFLKVGPTT QERIEAIRND TELRDTFVPP  660
SSKLWVQVEN PTMPSDNMRD QFSARLSDKE GTNASSSLEL QIPQGNRLTG TADAPLQPLS  720
SPVKPEVVLQ VHKNCKRRRH AELLPLADIS NHPNLAARLR DSLHEKLESQ LEFPNTLLEL  780
LNDERPVSEQ CPQNLAPGNA TWSSPGVPRV SRKRSSRVTT PKDMRPRVSN MLIDDKMLQS  840
ATETPIKDHY TCKRGKKITK SAFKELQTFP RNVKLRLLMP DPASCENDMI EMTNQEGRNV  900
KSPILTKAVK PLRLIKTSPA KGYSWTRIRT TPKSNAVVRC ETNIEESVTG EERHEVKGKS  960
LSKGSPDIET NKIAVLRSSK YRGVTRHRHT GRFEAHLWDN SKVKLGLARR GRQVYLGAYT  1020
DEEQAAKAHD LAALKYWGPG VHTNFPPSLY EEELKTMKNL TKEDYILLLR RKSPGFTRGI  1080
SKYRGVTRHH QEGRWEARIG RHSGAKYHYL GTYDTEEEAA VAYDRAAVLH RGPNAVTNFD  1140
ISNYIKRKTK NPKTEITVCP PQM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403104.10.0uncharacterized protein LOC112295569
TrEMBLA0A2K1IZT80.0A0A2K1IZT8_PHYPA; Uncharacterized protein
STRINGPP1S17_137V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.17e-71AP2 family protein