PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c18_20920V3.2.p

Common Name

PHYPADRAFT_161477

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 480aa MW: 52185.2 Da PI: 6.8627

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c18_20920V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.8	2.8e-34	51	105	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerFv+av+qLGG++kAtPk+++++m+vkgLtl+h+kSHLQkYRl Pp3c18_20920V3.2.p 51 KPRLRWTPELHERFVDAVTQLGGADKATPKSVMRIMGVKGLTLYHLKSHLQKYRL 105 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.403	48	108	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-33	48	106	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.9E-24	51	106	IPR006447	Myb domain, plants
SuperFamily	SSF46689	5.02E-17	51	106	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-8	53	104	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-21	147	193	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MFSMKKYMNP GTFQQRHQSS GSLYIPDKLQ FPYSSAMNGS DMVPLSPADP KPRLRWTPEL 60 HERFVDAVTQ LGGADKATPK SVMRIMGVKG LTLYHLKSHL QKYRLGKQLN RDQHFHNKDN 120 AGSSDLQRSN SMSDGSQKSQ NHQDGLQMTE AIQLQLEVQQ RLQDQLEVQK HLQLRIEAQG 180 KYLQSILEKA KETLASHTSE SPGLEAAHAE LTELANKVTT VGMIPLGFST LGMPLMAQPD 240 PLMTLHQLPR QPSRNSDTSS QKSFLTNLTA NAEDSGGVSG SAEPHGATED EDGVGQESSP 300 QFQEEMSANR LRTQGSNNAR GPQARLAHAA TTTALAGVVS SSSPHCNPVA NFWSTSSFQN 360 MASSPMNGVL SEVVQDCSPK DNNANQLATS LAMERLTSQR VGIHHLSDIP HSSNGLGSIH 420 SGSTSTSYSS LQDLYCGSAA TMHSGLVKAV INPMEQNHFL QCRGSELDLN FGWDSYISS*

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MFSMKKYMNP GTFQQRHQSS GSLYIPDKLQ FPYSSAMNGS DMVPLSPADP KPRLRWTPEL  60
HERFVDAVTQ LGGADKATPK SVMRIMGVKG LTLYHLKSHL QKYRLGKQLN RDQHFHNKDN  120
AGSSDLQRSN SMSDGSQKSQ NHQDGLQMTE AIQLQLEVQQ RLQDQLEVQK HLQLRIEAQG  180
KYLQSILEKA KETLASHTSE SPGLEAAHAE LTELANKVTT VGMIPLGFST LGMPLMAQPD  240
PLMTLHQLPR QPSRNSDTSS QKSFLTNLTA NAEDSGGVSG SAEPHGATED EDGVGQESSP  300
QFQEEMSANR LRTQGSNNAR GPQARLAHAA TTTALAGVVS SSSPHCNPVA NFWSTSSFQN  360
MASSPMNGVL SEVVQDCSPK DNNANQLATS LAMERLTSQR VGIHHLSDIP HSSNGLGSIH  420
SGSTSTSYSS LQDLYCGSAA TMHSGLVKAV INPMEQNHFL QCRGSELDLN FGWDSYISS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-21	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-21	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-21	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-21	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-21	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-21	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-21	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-21	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-21	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-21	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-21	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-21	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.19271	0.0	gametophore\| sporophyte

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024403235.1	0.0	protein PHR1-LIKE 2-like isoform X1
Refseq	XP_024403236.1	0.0	protein PHR1-LIKE 2-like isoform X1
Refseq	XP_024403237.1	0.0	protein PHR1-LIKE 2-like isoform X1
Refseq	XP_024403238.1	0.0	protein PHR1-LIKE 2-like isoform X1
Refseq	XP_024403239.1	0.0	protein PHR1-LIKE 2-like isoform X1
TrEMBL	A0A2K1J1T8	0.0	A0A2K1J1T8_PHYPA; Uncharacterized protein
STRING	PP1S33_139V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-60	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c18_20920V3.2.p
Entrez Gene	5921877

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]