PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c18_1800V3.1.p

Common Name

PHYPADRAFT_160018

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

ERF

Protein Properties

Length: 203aa MW: 22834.8 Da PI: 10.069

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c18_1800V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.8	6.2e-14	104	146	2	47
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 ++GVr ++ ++Wv eIr s ++++++lg++ t+eeAa+a++ Pp3c18_1800V3.1.p 104 SFRGVRHRPELNKWVTEIRPTS---QKRKIWLGTYETPEEAARAYD 146 69*************99942...35****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	15.791	104	164	IPR001471	AP2/ERF domain
Pfam	PF00847	7.7E-10	104	146	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.8E-19	104	162	IPR001471	AP2/ERF domain
SMART	SM00380	4.2E-14	104	167	IPR001471	AP2/ERF domain
CDD	cd00018	5.57E-16	105	150	No hit	No description
SuperFamily	SSF54171	1.96E-13	105	160	IPR016177	DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MNLTISSIIE QGKPKTKKWD PCGGKVKEQA LQLTTKIESP KVKKEVEESK SESSLEEESK 60 GMRLAAKDTS GRNAFKFRNI DLNKAPSAWD TEEVSASNTG DTTSFRGVRH RPELNKWVTE 120 IRPTSQKRKI WLGTYETPEE AARAYDVGIF YTKKKIPYNF EDSPQQLQLY PIPPELPWES 180 FAALVKQRAT SAAKRARVPS SS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.7225	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024402755.1	1e-147	pathogenesis-related genes transcriptional activator PTI6-like
Refseq	XP_024402756.1	1e-147	pathogenesis-related genes transcriptional activator PTI6-like
TrEMBL	A0A2K1IZM7	1e-146	A0A2K1IZM7_PHYPA; Uncharacterized protein
STRING	PP1S17_332V6.1	1e-146	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19790.1	1e-13	related to AP2 11

Link Out ? help Back to Top
Phytozome	Pp3c18_1800V3.1.p
Entrez Gene	5918451

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]