PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_14800V3.1.p
Common NamePHYPADRAFT_64713
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GATA
Protein Properties Length: 346aa    MW: 37742.1 Da    PI: 9.0013
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_14800V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.79.2e-20189223135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cgt+kTplWR+gp g+k+LCnaCG++++k g+
  Pp3c18_14800V3.1.p 189 CAHCGTSKTPLWRNGPGGPKSLCNACGIRFKKAGR 223
                         ********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.32E-14183228No hitNo description
SMARTSM004016.9E-20183234IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.033183222IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.3E-17187223IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.22E-15188234No hitNo description
PROSITE patternPS003440189214IPR000679Zinc finger, GATA-type
PfamPF003201.2E-17189223IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MVGVQADTSP SAGGLCVRVT PRKMEEPGYC NLSLAVDCTL SLGSTTSRID IPARLSRAGS  60
PDQDHPWPLT VLSERVERDR SEQDMSWGGS SNRSDPDISP EYFPQVSERG RITDFGRKDF  120
KAWPRSSSQS YKDEANASKS LFSTLEDQAY SNRSSRQPWL PNYFASRVTV EAKAASRIEQ  180
EGDGTARVCA HCGTSKTPLW RNGPGGPKSL CNACGIRFKK AGRRSAASGC SESQTSPPVT  240
TKVGRRRPAN DDQQYWMFPP EVKSRKRSRG PLVRTSDSLL SGSCMTWQSS LFATSPKSTL  300
QQDFRASPVS RSQVKELNLQ MGSFSSDEEE GAVLLMALSC GMVNA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.72610.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403006.10.0GATA-type zinc finger protein 1-like
TrEMBLA0A2K1J1520.0A0A2K1J152_PHYPA; Uncharacterized protein
STRINGPP1S3_329V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-18cytokinin-responsive gata factor 1
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]