PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c18_14540V3.2.p | ||||||||
Common Name | PHYPADRAFT_64729 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB_related | ||||||||
Protein Properties | Length: 245aa MW: 27354.7 Da PI: 8.665 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.9 | 5.6e-09 | 169 | 223 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwq 45 ++WT eE ++l+++v+q + +W Ia+ + gRt+ +c+ r + Pp3c18_14540V3.2.p 169 KNWTDEEMKRLLEVVAQRKSVksrfekhfgrkrSWGDIAENAP-GRTGVECRMRMN 223 68***************99779*********************.********8866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-10 | 167 | 227 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-5 | 167 | 228 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.38E-7 | 167 | 225 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-7 | 169 | 224 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.16E-7 | 170 | 225 | No hit | No description |
PROSITE profile | PS50090 | 7.631 | 170 | 226 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MHSVSDDPMI WESLLPYLKT LDKFVLAARA EEIQREQPEN AVDENCIDAA AGDMNVTEIG 60 AMGAAVVDQY HSADQDATSK PGGRLKAQFP DKVGPTTFTN PHRKDQVIEL QYEGCDENYS 120 LKSRTGGTAG EAKGKAEGSK KRRRCGTGEI DGAENEKTKG EKTCKNRSKN WTDEEMKRLL 180 EVVAQRKSVK SRFEKHFGRK RSWGDIAENA PGRTGVECRM RMNTVTKSCK TIKQFCENKN 240 KEFR* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024401778.1 | 0.0 | uncharacterized protein LOC112294978 | ||||
TrEMBL | A0A2K1J134 | 0.0 | A0A2K1J134_PHYPA; Uncharacterized protein | ||||
STRING | PP1S3_360V6.1 | 1e-133 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c18_14540V3.2.p |
Entrez Gene | 5915461 |
Publications ? help Back to Top | |||
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