PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_14260V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 439aa    MW: 47799.8 Da    PI: 8.1146
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_14260V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.35.9e-12276334563
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         kr++r   NR +A rs +RK+ +i eLe+kv++L++e ++L  +l  l+k   +l++e+
  Pp3c18_14260V3.4.p 276 KRAKRILANRQSAARSKERKLRYISELERKVQSLQTEATTLSAQLTLLQKDTTSLTTEN 334
                         9******************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.1E-16272336IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.128274337IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-11276329No hitNo description
Gene3DG3DSA:1.20.5.1704.7E-11276331No hitNo description
PfamPF001701.8E-10276334IPR004827Basic-leucine zipper domain
CDDcd147031.15E-23277326No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEGLGGGYEA FVERIQSAAD TAAKSSGNAS TSNNTLHPPQ SQLHQLRFVG YPSTSHPFTV  60
KRDASPGHSD GSMRMKESVE VSMQDAVNSS APPSFTGLGQ PPRMSSPAHN YSTDVNQMPD  120
SPPRRRGHRR VQSEIALRLP DEASFERELH GSEMPALTDD GNEDLFSMYI DMEQINNYSA  180
TSGQAGAKST AGASSVLPPT SHHSRSPSLD TLAGLNSDRP GLGGSYSTSS EVRRLRHQHS  240
SSMDGSTSFN MSDYEGSDRK AMASAKLSEI ALIDPKRAKR ILANRQSAAR SKERKLRYIS  300
ELERKVQSLQ TEATTLSAQL TLLQKDTTSL TTENSELKLR LHSMEQQAQL RDALHEALRD  360
EVQRLKVATG QNLNMSGQHV FQTQKLQQST LNNQQQQASQ PQMHSDYMQR SGYGLSTGFM  420
KAEGSSIAIN HGSTASFG*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403159.10.0transcription factor RF2a-like
RefseqXP_024403160.10.0transcription factor RF2a-like
SwissprotQ040881e-77POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A2K1J1140.0A0A2K1J114_PHYPA; Uncharacterized protein
STRINGPP1S3_401V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.14e-72bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]