PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_13350V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family CO-like
Protein Properties Length: 488aa    MW: 53956.4 Da    PI: 5.5294
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_13350V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.71.1e-082164340
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        +r C+ +  k +++fC  ++ +lC  C ++ H+       H++v
  Pp3c18_13350V3.3.p 21 ARACDVCATKGAHWFCAADDAYLCTACDTQVHSAnalslrHERV 64
                        678*****************************668888888876 PP
2CCT67.34.2e-23432475144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R+a++lRYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Pp3c18_13350V3.3.p 432 RDARVLRYKEKRRTRLFSKKIRYEVRKLNAERRPRMKGRFVKRT 475
                         99****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.6E-71966IPR000315B-box-type zinc finger
PROSITE profilePS5011910.1961966IPR000315B-box-type zinc finger
PfamPF006435.1E-82164IPR000315B-box-type zinc finger
CDDcd000211.40E-72266No hitNo description
PROSITE profilePS5101715.884432474IPR010402CCT domain
PfamPF062031.6E-17432474IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0010223Biological Processsecondary shoot formation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MATKVANNSV AIAMAFAGRS ARACDVCATK GAHWFCAADD AYLCTACDTQ VHSANALSLR  60
HERVRLSPNG TPLKSKASKE EERCGDHHHK SKKQHPSPAQ VLPSRKRPRT SRPYSQHLKR  120
LTQISSQMVH KVVKSEDNSF AAKAELESFD FLETDEFLND GNQEVPSLSP AAEQESSPCS  180
SDFETLSFDY EFQAGDHSAS ADSFSGFFKG KAAQTHNVLD DGDQFLVPDT FNFTLDAEMP  240
DSTAAVPADS NIDLAGDAFF FPGDIPGLDG FESFVPDMNI SDDFSMTFNL ALQNGVEAFE  300
GDAVATTGSA LEACQLGPEP DRFITGPFAR FFAQKMKAKL SEPMCAERIK SEAKEMLRCC  360
REGEDEAQRV PTLQLNLADV LTAWSNRGEP WIDYRMPQLA PSEDSNSSGS DVGLVPDMDA  420
ATVDDILSAG DRDARVLRYK EKRRTRLFSK KIRYEVRKLN AERRPRMKGR FVKRTALSVL  480
RWSWPFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1442458RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.164611e-146gametophore| protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402441.10.0zinc finger protein CONSTANS-LIKE 7-like
TrEMBLA0A2K1J0Y60.0A0A2K1J0Y6_PHYPA; Uncharacterized protein
STRINGPP1S3_491V6.20.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.17e-41B-box type zinc finger protein with CCT domain