PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_10680V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 573aa    MW: 62169.7 Da    PI: 5.5956
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_10680V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.2e-182271255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g
  Pp3c18_10680V3.1.p 22 KYRGVRRRP-WGRYAAEIRDPH----TrERRWLGTFDTAEQAAVAYDLAARSMRG 71
                        8********.**********73....25999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.2862279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-282278IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-202279IPR016177DNA-binding domain
PfamPF008475.5E-112271IPR001471AP2/ERF domain
CDDcd000181.10E-282278No hitNo description
SMARTSM003802.2E-322285IPR001471AP2/ERF domain
PRINTSPR003675.5E-92334IPR001471AP2/ERF domain
PRINTSPR003675.5E-94561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MGVRALERKG GSKKVKKPQE GKYRGVRRRP WGRYAAEIRD PHTRERRWLG TFDTAEQAAV  60
AYDLAARSMR GLKARTNFVY PTHQTCLMSA ALAASRASGQ SKGEGFFGGV HGGKSGRNLD  120
WSMTLMPDGK NDGAALSSRN FMLGSMDTLL DPSSEPAFRH MYETVERLAS AISDPRPRKS  180
LHEDGDLLNQ HACGKVTDVR RSSGRRDQWA VLDVRESALS QSLEQNTGGK SVLCEGRECA  240
IVEVSHPEVT CIGSQPSFYH EISASNESSL TESGGPLRSR ESGQISRASS SSKFYEHGPG  300
TLSQVVSKYV TVDKETLTVS SSSPDNRLVD SSQCFLSTQV SYSEDSSSNL VVSSYIDTAT  360
SPDSARFIPS SVESSEPGSA AGVTFCNTSS SNRNPDNLQS ILPPNVSSAM HNAPRPVYAQ  420
PCLDEPRPGL TQNATWSDVT HDRAESWRNL CEPPAAWQYY TDPGMVANDM EDELVDVTRE  480
LAMRTSTACQ GTQDGGCGEC FMSGDWLFPH CDAADSSFSC MSDISGDEYL CNDGYSSAGV  540
HVSSLLHHAF YDAHQSLPVL LEASMDYNAL GM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1919781171Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401854.10.0uncharacterized protein LOC112295005
TrEMBLA0A2K1J0L30.0A0A2K1J0L3_PHYPA; Uncharacterized protein
STRINGPP1S19_272V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-30DORNROSCHEN-like