PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_6790V3.21.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family CO-like
Protein Properties Length: 540aa    MW: 59529.6 Da    PI: 6.5714
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_6790V3.21.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.5e-06444539
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                         C+ ++e +++ +C+ ++  lC +C  + H g       H++
  Pp3c17_6790V3.21.p  4 ACEFCGEGRATVYCRADSARLCLTCDRQVH-GanalaqrHSR 44
                        6******99*********************.54677777765 PP
2zf-B_box18.93.1e-064687439
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                          C  ++  ++   C +C++ lCe+C +e+H+       H++
  Pp3c17_6790V3.21.p 46 LLCHSCNVRPAAVRCPSCHSSLCETCDDEIHNPilgtdqHQR 87
                        57******99*********************54777777776 PP
3CCT60.74.8e-21481523143
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                         R+ a+lRYkeK+k R+F KkirYesRKa+A+ R RvKGrFvk 
  Pp3c17_6790V3.21.p 481 RDSAMLRYKEKKKIRRFGKKIRYESRKARADIRTRVKGRFVKV 523
                         899**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.139147IPR000315B-box-type zinc finger
SMARTSM003362.5E-9147IPR000315B-box-type zinc finger
CDDcd000211.45E-7547No hitNo description
PROSITE profilePS501199.24390IPR000315B-box-type zinc finger
SMARTSM003361.44890IPR000315B-box-type zinc finger
PfamPF062032.1E-15481523IPR010402CCT domain
PROSITE profilePS5101714.892481523IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MQAACEFCGE GRATVYCRAD SARLCLTCDR QVHGANALAQ RHSRTLLCHS CNVRPAAVRC  60
PSCHSSLCET CDDEIHNPIL GTDQHQRRSF ECFTGCPTAT ELAMLWASQA NDVRKRGGAV  120
LASSPFKKSM QWNSWEPRIG AVALNPIAPV DVRESCTAQR TGDNFNVGAY MSGPGPPRIL  180
KKMVSVSTAK ELGHEREVFQ QLEKLQAQDP VRIIKSENLI APRKPHSSTN VLEKQEPLNN  240
YAVPAQRHVD QELVQNSRSV AYNPEAGLVQ GRVAKVEVEA DGYQRGTDGF WRNNSISQAN  300
QLWGQNMQDL GMCEEEERDL CSGFNVPDVN LSFENYEDIF ASSQAPNAAT FSACTSMEAD  360
AGRESHMQSI PESELFRSLA SNDQFNFQAQ LDKLGLGRHS AENEAALRLS GKALDDMDMS  420
TMNVQFTTSQ ENSGLSWTAS AVSGDSSDYV ECDLSPVLLT PSGESSLGSG SPDSVTFAQA  480
RDSAMLRYKE KKKIRRFGKK IRYESRKARA DIRTRVKGRF VKVGQACDYD PMVQPQWSL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.89240.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400562.10.0zinc finger protein CONSTANS-LIKE 9-like isoform X1
RefseqXP_024400563.10.0zinc finger protein CONSTANS-LIKE 9-like isoform X1
RefseqXP_024400565.10.0zinc finger protein CONSTANS-LIKE 9-like isoform X1
RefseqXP_024400566.10.0zinc finger protein CONSTANS-LIKE 9-like isoform X1
RefseqXP_024400567.10.0zinc finger protein CONSTANS-LIKE 9-like isoform X1
TrEMBLA0A2K1J2Z40.0A0A2K1J2Z4_PHYPA; Uncharacterized protein
STRINGPP1S26_5V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.17e-33B-box type zinc finger protein with CCT domain