PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_5920V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 334aa MW: 36518.2 Da PI: 7.9453 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.1 | 2e-27 | 71 | 121 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien + rqvtfskRr g+lKKA+EL vLCda+va+iifsstgkl+e++s Pp3c17_5920V3.2.p 71 KKIENPTSRQVTFSKRRGGLLKKAHELAVLCDADVALIIFSSTGKLFEFAS 121 68***********************************************86 PP | |||||||
2 | K-box | 89.5 | 6.3e-30 | 144 | 230 | 13 | 99 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ l +e+ kL++e+e Lq++qRh+lGedL+ L++ +L qLeqqL+ + +++R++Kn+llle+ieel++ke++l+ n++Lr++l+ Pp3c17_5920V3.2.p 144 NSDFLGREVVKLRQELERLQHSQRHMLGEDLQVLTVPDLLQLEQQLDMGASRVRARKNQLLLEEIEELRRKEHDLHAVNEELRQRLA 230 5667889*****************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.2E-42 | 63 | 122 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.702 | 63 | 123 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.15E-45 | 64 | 141 | No hit | No description |
SuperFamily | SSF55455 | 1.02E-33 | 64 | 150 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-30 | 65 | 85 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 65 | 119 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.6E-26 | 72 | 119 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-30 | 85 | 100 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-30 | 100 | 121 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 16.13 | 145 | 235 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.6E-27 | 145 | 229 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0090376 | Biological Process | seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MMTASGQCKS LCFSLSLNSS NKGSLELLGR GLESGGGCDV VTADSSSPGV GKVDPPKERE 60 VVMGRGKIEI KKIENPTSRQ VTFSKRRGGL LKKAHELAVL CDADVALIIF SSTGKLFEFA 120 SSGSMRDILE RYSKCPDGSQ TGVNSDFLGR EVVKLRQELE RLQHSQRHML GEDLQVLTVP 180 DLLQLEQQLD MGASRVRARK NQLLLEEIEE LRRKEHDLHA VNEELRQRLA DVKGMLSLEA 240 GPARAATSGS PGGQGVSAPT HEVGGSSQQQ AVTVYPTRIN LRDPQTSQTS LHLGLFPESF 300 MPSTSRRPSQ QSPTEPEGES SMRWEHSHYR SQK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-21 | 63 | 148 | 1 | 85 | MEF2C |
5f28_B | 6e-21 | 63 | 148 | 1 | 85 | MEF2C |
5f28_C | 6e-21 | 63 | 148 | 1 | 85 | MEF2C |
5f28_D | 6e-21 | 63 | 148 | 1 | 85 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.16476 | 0.0 | protonema |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF077713 | 1e-139 | EF077713.1 Physcomitrella patens MADS-domain transcription factor (PPMC5) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024399807.1 | 0.0 | MADS-box protein GGM13-like | ||||
TrEMBL | A0A2K1J2V3 | 0.0 | A0A2K1J2V3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S209_130V6.2 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.1 | 5e-50 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_5920V3.2.p |