PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_470V3.2.p | ||||||||
Common Name | HAP3D | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NF-YB | ||||||||
Protein Properties | Length: 197aa MW: 22381.2 Da PI: 4.5191 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 138 | 2.6e-43 | 36 | 126 | 3 | 93 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 eq+ ++Pia v+rimkk+lP n+kisk+aket+q c sef+sf+t+ea dkcqrekr+ti+gdd+lwa+ +l f+dy+e l++yl+kyr++ Pp3c17_470V3.2.p 36 EQEPLIPIASVVRIMKKILPHNTKISKEAKETMQLCTSEFVSFITDEAFDKCQREKRRTITGDDVLWAFRSLNFDDYAELLEIYLQKYRQF 126 89999************************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.8E-42 | 30 | 146 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.77E-33 | 37 | 134 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-22 | 41 | 103 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.1E-14 | 68 | 86 | No hit | No description |
PRINTS | PR00615 | 3.1E-14 | 87 | 105 | No hit | No description |
PRINTS | PR00615 | 3.1E-14 | 106 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MADSGSDKPR SPENDQHPDN ESGGVQLQDH DTIVIEQEPL IPIASVVRIM KKILPHNTKI 60 SKEAKETMQL CTSEFVSFIT DEAFDKCQRE KRRTITGDDV LWAFRSLNFD DYAELLEIYL 120 QKYRQFLEVK FGIQSVGMES NLSNEEGLRF AGLSDGMSGD MNQEGVTVPA ELMLHSYGNE 180 PSPEMMYYLH HMRPPY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 9e-36 | 36 | 125 | 3 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 9e-36 | 36 | 125 | 3 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024400382.1 | 1e-147 | nuclear transcription factor Y subunit B-1-like | ||||
Refseq | XP_024400383.1 | 1e-147 | nuclear transcription factor Y subunit B-1-like | ||||
Swissprot | O23310 | 9e-41 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A0I9QPW9 | 1e-145 | A0A0I9QPW9_PHYPA; CCAAT-box binding factor HAP3-like protein | ||||
STRING | PP1S148_126V6.1 | 1e-146 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 4e-43 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_470V3.2.p |
Publications ? help Back to Top | |||
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