PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c17_4370V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Nin-like

Protein Properties

Length: 1252aa MW: 135592 Da PI: 5.5652

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c17_4370V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.5	2.7e-28	780	830	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Pp3c17_4370V3.1.p 780 EKTIGLDVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 830 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.075	764	850	IPR003035	RWP-RK domain
Pfam	PF02042	5.6E-25	783	830	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.85E-22	1141	1232	No hit	No description
PROSITE profile	PS51745	24.155	1147	1229	IPR000270	PB1 domain
SMART	SM00666	1.0E-16	1147	1229	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.1E-18	1148	1228	No hit	No description
CDD	cd06407	4.40E-37	1148	1228	No hit	No description
Pfam	PF00564	3.6E-16	1148	1228	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1252 aa Download sequence Send to blast
MEIPPPNERF QPTMPRWRTS ELLALSQQLS PGGQFPGSDS KFLIDDTLLS DLMDLDPLCD 60 QSGEPWVAAG QDFSLPFAAF SPGQFSPGNF SPSAMSPQPQ SQASPNSQLY AQVNSGMAVP 120 GGHLSPREIL VQDGGLTPSP SRLVDLLEQP STSEGYLVAM SPGTSANFAE MSQIYLSNGS 180 TANSHANLHS NSHGAMVNER VINLGNNRSN YGRNCLTVTN ATMERNPEGE SLLRQAELRD 240 EYAGQPMDPA AFEYINATQD AQYDMVTKSE TSKKRLVVTG GSLTLKERIT QALRFIGRSC 300 VDVLAQVWMP VRTADNQTVL STREQPFVLE RKTDRMWTYR SISENYVFAV TGGFPGLPGR 360 VYLQQVPEWT PNVQFYSDHE YLRVKHAMAC DVKGTLAVPV FEASSRNCLA VIELVMKAEK 420 VQYAPEIDII CRALQAVNLS CTDGMELPAL EFRTQGRRAA LAEISEVLTA VCETHNLPLA 480 QTWVPGSHHS VDKPSSNKKC RVESGTNSKS SGGSHSSNRV CLCTGDGPHY VKDSKMWGFR 540 QACLEHYLEK GQGVPGKAFA SNQPAFESDV KNYSKIEYPL GHYAQLFGLT AAVAIRLRSI 600 HTGADDFVLE FFLPVKCISS DDQQVMLNSL SITMQRVCRS LRTVTDKELA DELKAASAEE 660 STEAESNPPK PVDPAEEQRN AAASGIELPP SENATENPTV QEKQPQQISQ EIPALPLERS 720 QSLVSEKAQV GESNDNVEPL QLFEKQPAIQ VPGAARTFTS TAQKAANQNR RLDRRRGTTE 780 KTIGLDVLQQ YFAGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV SRSLKKLQGV 840 IESVQGADGT LRINAFSGDI ASAAVAAAAV TSTVPAAKDT TTEDGRSAAS PSEACHNQHD 900 GISNGESNQT PLSVEDEDSS PHDIQRLRHP TGASNLSMAR AEPKVPVNLA NANGTRPSLP 960 IDHTRDRNSD ESSGGAEFGS TNHGGADQDF YAVSAEQESD GTGRKLDIKE VSAKDPPTLY 1020 IPNGSSNPSH SGGSDWDRSP NGSMSDFGRN TDSGSGTGFN GGAICVESRV HGGASALAAL 1080 RDSDLSSYGN PCDYERYALD DSPREVTGAH RTGSSHHNGS DSSSPSSGAG GYARKHYWPV 1140 PVVEPEAVTV KATFRADTVR FKLLVGSGYL DLRNEISRRL KVDEHGFDLK YLDDEEEWML 1200 ITCDADVKEC IDVAQTLGRH TVKLMVRQSG SWTSSGNNSN VSLQDMNCHA A*

Sequence ? help Back to Top

Protein Sequence Length: 1252 aa Download sequence Send to blast

MEIPPPNERF QPTMPRWRTS ELLALSQQLS PGGQFPGSDS KFLIDDTLLS DLMDLDPLCD  60
QSGEPWVAAG QDFSLPFAAF SPGQFSPGNF SPSAMSPQPQ SQASPNSQLY AQVNSGMAVP  120
GGHLSPREIL VQDGGLTPSP SRLVDLLEQP STSEGYLVAM SPGTSANFAE MSQIYLSNGS  180
TANSHANLHS NSHGAMVNER VINLGNNRSN YGRNCLTVTN ATMERNPEGE SLLRQAELRD  240
EYAGQPMDPA AFEYINATQD AQYDMVTKSE TSKKRLVVTG GSLTLKERIT QALRFIGRSC  300
VDVLAQVWMP VRTADNQTVL STREQPFVLE RKTDRMWTYR SISENYVFAV TGGFPGLPGR  360
VYLQQVPEWT PNVQFYSDHE YLRVKHAMAC DVKGTLAVPV FEASSRNCLA VIELVMKAEK  420
VQYAPEIDII CRALQAVNLS CTDGMELPAL EFRTQGRRAA LAEISEVLTA VCETHNLPLA  480
QTWVPGSHHS VDKPSSNKKC RVESGTNSKS SGGSHSSNRV CLCTGDGPHY VKDSKMWGFR  540
QACLEHYLEK GQGVPGKAFA SNQPAFESDV KNYSKIEYPL GHYAQLFGLT AAVAIRLRSI  600
HTGADDFVLE FFLPVKCISS DDQQVMLNSL SITMQRVCRS LRTVTDKELA DELKAASAEE  660
STEAESNPPK PVDPAEEQRN AAASGIELPP SENATENPTV QEKQPQQISQ EIPALPLERS  720
QSLVSEKAQV GESNDNVEPL QLFEKQPAIQ VPGAARTFTS TAQKAANQNR RLDRRRGTTE  780
KTIGLDVLQQ YFAGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV SRSLKKLQGV  840
IESVQGADGT LRINAFSGDI ASAAVAAAAV TSTVPAAKDT TTEDGRSAAS PSEACHNQHD  900
GISNGESNQT PLSVEDEDSS PHDIQRLRHP TGASNLSMAR AEPKVPVNLA NANGTRPSLP  960
IDHTRDRNSD ESSGGAEFGS TNHGGADQDF YAVSAEQESD GTGRKLDIKE VSAKDPPTLY  1020
IPNGSSNPSH SGGSDWDRSP NGSMSDFGRN TDSGSGTGFN GGAICVESRV HGGASALAAL  1080
RDSDLSSYGN PCDYERYALD DSPREVTGAH RTGSSHHNGS DSSSPSSGAG GYARKHYWPV  1140
PVVEPEAVTV KATFRADTVR FKLLVGSGYL DLRNEISRRL KVDEHGFDLK YLDDEEEWML  1200
ITCDADVKEC IDVAQTLGRH TVKLMVRQSG SWTSSGNNSN VSLQDMNCHA A*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.17807	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024400585.1	0.0	protein NLP6-like
TrEMBL	A0A2K1J2N5	0.0	A0A2K1J2N5_PHYPA; Uncharacterized protein
STRING	PP1S26_246V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-143	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c17_4370V3.1.p