PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_3450V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 25359.5 Da PI: 4.5652 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2.1e-18 | 44 | 98 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr ++ +grWv+eIr+p + ++ r++lg+f +aeeAa a++aa ++l+g Pp3c17_3450V3.1.p 44 SRYRGVRLRP-WGRWVSEIREPQRRDsRTYRIWLGSFRSAEEAAHAYDAALLCLRG 98 79********.**********96655677*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.31E-19 | 44 | 106 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.8E-12 | 44 | 98 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.22E-28 | 44 | 107 | No hit | No description |
SMART | SM00380 | 2.5E-31 | 45 | 112 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.879 | 45 | 106 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-28 | 45 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-9 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-9 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MSSINSTQDH VAIEKLSADR IVFLDVKFAV TNCRGEEMSG GGSSRYRGVR LRPWGRWVSE 60 IREPQRRDSR TYRIWLGSFR SAEEAAHAYD AALLCLRGSS ANLNFPNFNY RLPPGIPGRY 120 STREIQAAAS AAAAQSAGRQ FSYDNFMSPT SPSESEEEVE DITYPGNSSH VQYQTQSSQP 180 SYNYNSDDDP RNQMNRIAQA MLIDPPNHDS DDTDESSDDD DPPLWC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-16 | 44 | 116 | 13 | 81 | Ethylene-responsive transcription factor ERF096 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024401252.1 | 1e-104 | ethylene-responsive transcription factor ERF038-like | ||||
TrEMBL | A0A2K1J2L3 | 1e-167 | A0A2K1J2L3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S26_306V6.1 | 1e-138 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35700.1 | 2e-13 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_3450V3.1.p |