PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_24040V3.2.p | ||||||||
Common Name | PHYPADRAFT_235397, PPTIM1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 245aa MW: 26842.2 Da PI: 7.4408 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 39.4 | 7.7e-13 | 18 | 52 | 10 | 44 |
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstg 44 + tfskR+ g++ KA+ + LCd++va+i+f ++g Pp3c17_24040V3.2.p 18 NSTFSKRKDGLMNKAKQMGSLCDVDVALIVFCPRG 52 569*****************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.4E-7 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.2E-14 | 1 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.876 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-12 | 18 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-8 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGRLKIDVDK KRPASKINST FSKRKDGLMN KAKQMGSLCD VDVALIVFCP RGDDVIDVSH 60 GGTIDEVYQR YVRFRQRHNR PQQLVYRPRT GPRGHQEAPD PHPAGNVHSL NLPGPAHDLD 120 GPYGLFPDAA AGGGGERGGG DGEGRGGAEL QAGGIPLSPN EAFELYLNLK AQMETVSQYL 180 DLQHRQQVNQ QQALPPPPPH PFPPMQQQQQ HLPQDVMAPP HHFLPNPPPF NADALFHNPN 240 PFPN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024400982.1 | 1e-177 | myocyte-specific enhancer factor 2B-like | ||||
TrEMBL | A9SDU7 | 1e-176 | A9SDU7_PHYPA; Type I MADS-domain protein PPTIM1 | ||||
STRING | PP1S68_293V6.1 | 1e-177 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77980.1 | 5e-13 | AGAMOUS-like 66 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_24040V3.2.p |
Entrez Gene | 5927682 |
Publications ? help Back to Top | |||
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