PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_23560V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | G2-like | ||||||||
Protein Properties | Length: 471aa MW: 49747 Da PI: 8.24 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.7 | 6.1e-34 | 52 | 106 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtpeLH+rFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Pp3c17_23560V3.1.p 52 KQRLRWTPELHDRFVDAVTQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 106 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.388 | 49 | 109 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.17E-18 | 50 | 106 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-32 | 51 | 107 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.6E-26 | 52 | 107 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.8E-9 | 54 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.3E-25 | 139 | 185 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MYQNKKFSTT SLMPQRSASQ ALELRGSSAA GASVNSAGSP GGGSGGGGSA TKQRLRWTPE 60 LHDRFVDAVT QLGGPDRATP KGVLRVMGVQ GLTIYHVKSH LQKYRLAKYI PESLSDGGKS 120 DKKNNPTDLL PTLDATSGIQ ITEALRMQME VQKRLHEQLE VQRHLQLRIE AQGKYLQKII 180 EEQQRVGSLN NRPGVTTDSA TPTVTDTTQG QVGLVNTKPA LPLTSVPQSD TLASNSLPPV 240 PVSTSNTRLT QATILPPQQP FQTQYGFETF ANPPALEGSP VQGASKRTRT EDRGGQSLAG 300 QSEPQQVSGV PQPGGPFLQP GQTQGSGGGA FHPSQSDFAS GATFSPRQGG RSFSQAPLSQ 360 QAYSQQPLPG VFNSQSFHPA NHANIYLPTQ AQCTEAQAPP DNSTSGSTRP PQEVSGKLDT 420 GAFLTNEREV ALPASEGDGG HRSAGPLSQA AIYEQWDHVG SDGQLCNEGG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-24 | 52 | 109 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-24 | 52 | 109 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-24 | 52 | 109 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-24 | 52 | 109 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024400664.1 | 0.0 | uncharacterized protein LOC112294460 isoform X1 | ||||
Refseq | XP_024400665.1 | 0.0 | uncharacterized protein LOC112294460 isoform X1 | ||||
TrEMBL | A0A2K1J592 | 0.0 | A0A2K1J592_PHYPA; Uncharacterized protein | ||||
STRING | PP1S68_240V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 4e-74 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_23560V3.1.p |