PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c17_23300V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Dof

Protein Properties

Length: 342aa MW: 36618.6 Da PI: 7.5709

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c17_23300V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121	4.3e-38	53	111	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + k ++cprC+s+ntkfCyynnys++qPr+fC++C+ryWt+GG+lrnvPvGgg+rk+ + Pp3c17_23300V3.1.p 53 PAKVIPCPRCESMNTKFCYYNNYSVTQPRHFCRQCQRYWTAGGTLRNVPVGGGSRKKSR 111 568899**************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-23	51	108	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.9E-33	55	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.518	57	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MQLPGHQNDS AALIGSKPQC SPNAALSGGS DAPASPSSPG SPTKIANATR EKPAKVIPCP 60 RCESMNTKFC YYNNYSVTQP RHFCRQCQRY WTAGGTLRNV PVGGGSRKKS RHPRGGAAEP 120 YLQRAGSYGV ASAGEHSIMQ NVGFQQMLTQ DMVGLNFAQL PGFVPPNTHH YVPCSMDHSD 180 GVYAPMTNKP PGQEDLSNLN VLYGTAPMGG YYPAPEMGGE NSGNAVKPEF WATSMAAPRV 240 VVPGSNPSRD GRLDSSMLLN LGLNNRSPTQ GGGNGKPMWD HQDLKPALPQ QKNGSPPHGS 300 STIEEEGSTP TNGYSNNRYE EGDTVSSMWH DMQHDLDNIF Q*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MQLPGHQNDS AALIGSKPQC SPNAALSGGS DAPASPSSPG SPTKIANATR EKPAKVIPCP  60
RCESMNTKFC YYNNYSVTQP RHFCRQCQRY WTAGGTLRNV PVGGGSRKKS RHPRGGAAEP  120
YLQRAGSYGV ASAGEHSIMQ NVGFQQMLTQ DMVGLNFAQL PGFVPPNTHH YVPCSMDHSD  180
GVYAPMTNKP PGQEDLSNLN VLYGTAPMGG YYPAPEMGGE NSGNAVKPEF WATSMAAPRV  240
VVPGSNPSRD GRLDSSMLLN LGLNNRSPTQ GGGNGKPMWD HQDLKPALPQ QKNGSPPHGS  300
STIEEEGSTP TNGYSNNRYE EGDTVSSMWH DMQHDLDNIF Q*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.13532	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024400213.1	0.0	dof zinc finger protein 1-like
TrEMBL	A0A2K1J572	0.0	A0A2K1J572_PHYPA; Uncharacterized protein
STRING	PP1S68_214V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69570.1	2e-30	Dof family protein

Link Out ? help Back to Top
Phytozome	Pp3c17_23300V3.1.p