PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_23070V3.1.p
Common NamePHYPADRAFT_77982
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 586aa    MW: 63331.6 Da    PI: 6.7583
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_23070V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.1e-09398445455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +     +K   Ka +L + ++Y++sLq
  Pp3c17_23070V3.1.p 398 SHSLAERVRREKISERMKYLQDLVPGC-----RKvTGKAVMLDEIINYVQSLQ 445
                         8*************************9.....67799***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-16392460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-10392449No hitNo description
Gene3DG3DSA:4.10.280.106.9E-17394458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.707394444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-6398445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-10400450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MAIMAPAPDQ AFMNLYSNMS GAVPILHPSS DSNELSSNLE KIVEHSACGI YPYSGPSTAS  60
ALQYPSWHPI QEMPITSNSN FGYGVPEIQR STLSNDRPNP SHSRFSSTLP PSSRGLSASR  120
GIMEEVRMRD VIGKPGRNLG AQRPSLWSSM ETGGITVDPF RGGLALHGVP SEVDNLAQIT  180
SDSAFVERAA KFSTFGTRTG EYVPEMLQRP AAGFVAATTK SVPGDVREES KCIAIDTIPG  240
KQSVLEAVEG ASKVTVDAIS NIKVEAAAFH ENTNISSCAE LQPGSQGEIS PDTISPARST  300
PPQDEPASRN KRKKPSTIDN DLASPDPKVG DVENSKAKRC KGEDTKSDCK GERSSSEISS  360
ESAGSPKVPQ KENNQKAKEF SKQDYIHVRA RRGQATDSHS LAERVRREKI SERMKYLQDL  420
VPGCRKVTGK AVMLDEIINY VQSLQRQVES LSMKVASVNP THSGRLTLES RLSNEDIIQS  480
QLSSIHGSSD SSINAAAFGS HHLQQQSELL LNVYCGFDHL QANLGNCFDI SSHHTTNPPI  540
GRLAEMQSMV RSFDNNLVSQ SSGWDGSPQS VNVHMGQLYQ QSGHL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.82110.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401024.10.0transcription factor bHLH78-like isoform X1
TrEMBLA0A2K1J5640.0A0A2K1J564_PHYPA; Uncharacterized protein
STRINGPP1S68_190V6.20.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.24e-46bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]