PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_21890V3.1.p
Common NamePHYPADRAFT_164347
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 723aa    MW: 78880.2 Da    PI: 7.0826
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_21890V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.23.9e-15512558455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ ErrRRdriN+++  L+el+P++      K +Ka++L +A++Y+k Lq
  Pp3c17_21890V3.1.p 512 VHNQSERRRRDRINEKMRALQELIPNS-----NKTDKASMLDEAIDYLKILQ 558
                         6*************************7.....5****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-19506567IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.942508557IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.65E-17511562No hitNo description
Gene3DG3DSA:4.10.280.101.3E-17512565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-12512558IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-16514563IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MSLYVPERER SGGMLDAVIP LNDFHRSKKS HFSQLALAPV PDQDTLEVAW NDNGKIDIQG  60
QDSQRSKSPW QINCISDWSS GQEAEAGVTP SKPDTPKGGN LLETGGNGSN TAPNPVHNID  120
VDNDEMVSWL QYPLDDPFCS DFFGEIQEAN TQLLRESFTH GSTKTLPRTN FPGASGNDAG  180
INRETPSDSA MLLGVGRVSG LLPQGGVEAF NKVRSLHSLQ QHSSLPRWPQ PLTPNSSSGS  240
SLLATNNLTF TKASAPTLAS PSHHMLPPKT QRVAPVLNSQ NTPQPSSPGS MNFSHFSRPA  300
AMVKANLHSL VGINCGPPPS TRVKQQHNSP VVRPIMEACT STGSSIAEST TAGQGPSGSY  360
QEVKTQPAVL EREQNNGIEE SRWPSAPCPS PTKDSDCVVS EGNFRSTPPD QETCRLSGVT  420
NGAVLASSDK GASHGTQHPD VQEPTITSSS GGYGTSIEPL QKVRTSNKRK CSEREETECQ  480
SEDGEDESVD TKHKPITTGR GSTTKRSRAA EVHNQSERRR RDRINEKMRA LQELIPNSNK  540
TDKASMLDEA IDYLKILQLQ LQMMSIRTGM TLPPMVMPPG LQHMQMPQMP QVAAMPSMGM  600
VQMGLGMGMM EQAAQRRTRM PMQSHTGPPL NVCLANTSSM VDVHDLRYQQ PGVLGYNTSM  660
SRQHQPMQTT KGLDLDKCNA YMLQQHQLLF QQQQLQQHQL HQHQQHLQHH QRAPNMGGGP  720
LQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1516521ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400599.10.0uncharacterized protein LOC112294434 isoform X1
RefseqXP_024400600.10.0uncharacterized protein LOC112294434 isoform X1
RefseqXP_024400602.10.0uncharacterized protein LOC112294434 isoform X1
TrEMBLA0A2K1J5040.0A0A2K1J504_PHYPA; Uncharacterized protein
STRINGPP1S68_85V6.20.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-32phytochrome interacting factor 3
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]