PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c17_21430V3.3.p

Common Name

PHYPADRAFT_164333

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bZIP

Protein Properties

Length: 349aa MW: 38434.9 Da PI: 4.9788

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c17_21430V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.9	6.7e-11	168	226	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr rr+ +NR +A+rsRqRK+++++eLe ++L eN +L + + ++++++lk+e+ Pp3c17_21430V3.3.p 168 KRKRRMSSNRASAQRSRQRKQKRLDELEILTAQLRLENATLSRRSKIAEQLAKNLKNEK 226 9*****************************************99999999999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.4E-9	164	228	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.024	166	229	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.5E-8	166	211	No hit	No description
SuperFamily	SSF57959	8.04E-8	168	217	No hit	No description
Pfam	PF00170	9.7E-9	168	226	IPR004827	Basic-leucine zipper domain
CDD	cd14702	1.77E-15	169	217	No hit	No description
PROSITE pattern	PS00036	0	171	186	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MCHGLIEERA RICVPDLLRG FLNQDQPDYE THVDDSTSVY GNGSTSTLPD SSGLSDNTLV 60 DMVNDYSTVV RKLDSEDVDD MEADAIASTG SLSTWFDCIK DDFCTAPKAV PTKSSLLVVK 120 LSHQDASDPV AAAPKSRKTR KSALTEGRNH AVHDSEMDGV APLLVDEKRK RRMSSNRASA 180 QRSRQRKQKR LDELEILTAQ LRLENATLSR RSKIAEQLAK NLKNEKNELA IKFEKLKKEL 240 EAARQPCAQG SPDSSNPSGI KSMNSSICNM DEGVAASSWT CVEQPKDNPR SVLMTLDDKK 300 QNISSTDVSR GTFQELYDPI DLNQFDGVGV PDLLQEGWYG SFTECLNA*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MCHGLIEERA RICVPDLLRG FLNQDQPDYE THVDDSTSVY GNGSTSTLPD SSGLSDNTLV  60
DMVNDYSTVV RKLDSEDVDD MEADAIASTG SLSTWFDCIK DDFCTAPKAV PTKSSLLVVK  120
LSHQDASDPV AAAPKSRKTR KSALTEGRNH AVHDSEMDGV APLLVDEKRK RRMSSNRASA  180
QRSRQRKQKR LDELEILTAQ LRLENATLSR RSKIAEQLAK NLKNEKNELA IKFEKLKKEL  240
EAARQPCAQG SPDSSNPSGI KSMNSSICNM DEGVAASSWT CVEQPKDNPR SVLMTLDDKK  300
QNISSTDVSR GTFQELYDPI DLNQFDGVGV PDLLQEGWYG SFTECLNA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.4569	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024399812.1	0.0	uncharacterized protein LOC112293994 isoform X2
TrEMBL	A9SDH1	0.0	A9SDH1_PHYPA; Predicted protein
STRING	PP1S68_33V6.2	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c17_21430V3.3.p
Entrez Gene	5927622

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]