PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_20740V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 321aa    MW: 35841.5 Da    PI: 4.7043
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_20740V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.56.6e-08212257346
                 AP2   3 ykGVrwdkkrgrWvAeIrdpse.ng...krkrfslgkfgtaeeAakaa 46 
                         +kGV   kk ++W +e r+ ++ ++   k+ +++lg++ t+ +Aa+a 
  Pp3c17_20740V3.1.p 212 IKGVV--KKGNKWTCETRVMKKrRQknsKYSKVWLGTYETPVQAARAL 257
                         58884..669*********55543346666****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.0073211279IPR001471AP2/ERF domain
PROSITE profilePS5103210.27211274IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-5214267IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-10214272IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MQAMVPYEAE VFDGYLEPDP SDSGQFFSTE AESSATSLLL VSPSVSAMLG APDPNFMRSP  60
TQVTGNFVSD PELQGFDQFE IESLDWAQYL HDHMEMEFEV NLFDVDPAWI ENTYQISDNP  120
LSRNTHQAQL MLAGDSPTTE GGTLDTEDLL PDSETEFDQV QEASIISEAC SSTSTSRSRW  180
PKVLWLVSAC NIMSSTTLRP KVPQELPTTG MIKGVVKKGN KWTCETRVMK KRRQKNSKYS  240
KVWLGTYETP VQAARALDVG KFFFCAKKNK NFYDPRSKSI LEGFFSHLVS QPLEVLVINV  300
KKLAQHYGLY GPPGIHNLVI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228235MKKRRQKN
2229234KKRRQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400406.10.0uncharacterized protein LOC112294332
TrEMBLA0A2K1J4V30.0A0A2K1J4V3_PHYPA; Uncharacterized protein
STRINGPP1S65_310V6.10.0(Physcomitrella patens)