PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_20210V3.1.p
Common NamePHYPADRAFT_77514
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 341aa    MW: 37465.2 Da    PI: 9.9504
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_20210V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.11.1e-1527126197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.......EEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.......yvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+ t++++ +++rlv+p +f+++hg+    +  ++l+ ++g   +v l++r + gr       ++++ GWk Fv +n L+ gD ++F+l
  Pp3c17_20210V3.1.p  27 FVKTITRAMTERNDRLVIPIEFINKHGNM--LHSVISLTGPNGCPLRVMLKVRTCAGRdgrlnvsVFMAHGWKYFVTENCLQMGDRIIFQL 115
                         89************************755..5669********999999988544444555889999************************ PP

                         -SSSEE..EEEEE CS
                  B3  85 dgrsefelvvkvf 97 
                         + rs+f  +v ++
  Pp3c17_20210V3.1.p 116 VARSRF--RVLLC 126
                         *99999..66666 PP
2B345.21.7e-142543361498
                         T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          rl lp +f+++hg     +  + l  + ++   vkl++  +++++r+ +++GWkeF  a+gLk+gD+++F+l+g s+f  vvkvf+
  Pp3c17_20210V3.1.p 254 LRLELPSHFVRAHGDR--FQASVFLLGPGSNFVVVKLSVrvNGNGNRVQFRGGWKEFSIAHGLKVGDVLLFSLIGLSKF--VVKVFS 336
                         4799*********866..6678******9966666665544999999***************************99999..**9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-1721125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-2022125IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-1725126No hitNo description
PfamPF023621.8E-1327126IPR003340B3 DNA binding domain
PROSITE profilePS5086312.30827129IPR003340B3 DNA binding domain
SMARTSM010196.4E-727129IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-16230336IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-20231336IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-21234336No hitNo description
PROSITE profilePS5086310.757241338IPR003340B3 DNA binding domain
SMARTSM010191.7E-11244338IPR003340B3 DNA binding domain
PfamPF023627.1E-12255336IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSRTGASPPL SNIDVQTMVL NSDAPCFVKT ITRAMTERND RLVIPIEFIN KHGNMLHSVI  60
SLTGPNGCPL RVMLKVRTCA GRDGRLNVSV FMAHGWKYFV TENCLQMGDR IIFQLVARSR  120
FRVLLCAQPH EEAVFGNLIS SSKDHESQLD SPSVISEAPP LPEVTSNQTS SLSPSRINLN  180
AVENCLNAEP MQWTYSERAK IKSVEGINPL LLSKDICHNS LGLNSAINLN SRYPQFTKKL  240
TGINVPQKGA GDDLRLELPS HFVRAHGDRF QASVFLLGPG SNFVVVKLSV RVNGNGNRVQ  300
FRGGWKEFSI AHGLKVGDVL LFSLIGLSKF VVKVFSLTPQ *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400355.10.0putative B3 domain-containing protein Os03g0619850
TrEMBLA9SCH80.0A9SCH8_PHYPA; Predicted protein
STRINGPP1S65_254V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-13B3 family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]