PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c17_19830V3.3.p

Common Name

PHYPADRAFT_164131

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 343aa MW: 38041.7 Da PI: 8.5804

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c17_19830V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	56.5	7.3e-18	55	145	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +W++ v L+++++e+ ++l+rg+l++ +W ev++++ re g +++kqCk k+enl++ryk +k+++ ++ + ++++py+d+l+ Pp3c17_19830V3.3.p 55 EWSHGAVDSLLDIYEEKYSSLQRGNLRGRHWHEVANHVssREDGTksAKTSKQCKMKIENLKRRYKMEKTHRMSNpALAGTNRWPYYDRLD 145 5***********************************99666663378******************999966677889****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.5E-20	55	147	No hit	No description

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MDGALVRIGT VDPVPFPSDH YPELQATPPA TKKICKRSRN GPSSGNDANR REYYEWSHGA 60 VDSLLDIYEE KYSSLQRGNL RGRHWHEVAN HVSSREDGTK SAKTSKQCKM KIENLKRRYK 120 MEKTHRMSNP ALAGTNRWPY YDRLDNMLGF TPKTLALDQR DCADTTLSGS EPMSSQEGNP 180 KSKETFTEPV MECEGESEMP AAVPLTEDRD VSPDVGEGDQ EQGVPHAAAG NRKDSKTDAS 240 EVNTMLNMPG TSGAKTRSKL PVRGSLPNPG VLLANSITAF AEVIARIEQA KMEMHKDLER 300 QRTEADLKRT QMVLNNQLEI AKLVIKGRKR KGRSLPSSSE SD*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MDGALVRIGT VDPVPFPSDH YPELQATPPA TKKICKRSRN GPSSGNDANR REYYEWSHGA  60
VDSLLDIYEE KYSSLQRGNL RGRHWHEVAN HVSSREDGTK SAKTSKQCKM KIENLKRRYK  120
MEKTHRMSNP ALAGTNRWPY YDRLDNMLGF TPKTLALDQR DCADTTLSGS EPMSSQEGNP  180
KSKETFTEPV MECEGESEMP AAVPLTEDRD VSPDVGEGDQ EQGVPHAAAG NRKDSKTDAS  240
EVNTMLNMPG TSGAKTRSKL PVRGSLPNPG VLLANSITAF AEVIARIEQA KMEMHKDLER  300
QRTEADLKRT QMVLNNQLEI AKLVIKGRKR KGRSLPSSSE SD*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.16422	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024401476.1	0.0	trihelix transcription factor ASIL1-like
Refseq	XP_024401477.1	0.0	trihelix transcription factor ASIL1-like
TrEMBL	A0A2K1J4N7	0.0	A0A2K1J4N7_PHYPA; Uncharacterized protein
STRING	PP1S65_218V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	4e-25	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pp3c17_19830V3.3.p
Entrez Gene	5927240

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]