PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_19780V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB
Protein Properties Length: 392aa    MW: 42744.2 Da    PI: 8.2074
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_19780V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-181461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEd +l+ +++q+G+g+W+t +++ g+ R++k+c++rw +yl
  Pp3c17_19780V3.1.p 14 RGPWTPEEDAKLLACIAQHGTGSWRTLPKKAGLQRCGKSCRLRWTNYL 61
                        89********************************************97 PP
2Myb_DNA-binding513.2e-1668110246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         gr+T  E++l+v++++ lG++ W++Ia+ ++ gRt++++k++w++
  Pp3c17_19780V3.1.p  68 GRFTDHEEQLIVNLHAALGSR-WSLIAAQLP-GRTDNDVKNYWNT 110
                         8********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-25564IPR009057Homeodomain-like
PROSITE profilePS5129425.716965IPR017930Myb domain
SuperFamilySSF466891.2E-2912108IPR009057Homeodomain-like
SMARTSM007175.3E-141363IPR001005SANT/Myb domain
PfamPF002492.5E-161461IPR001005SANT/Myb domain
CDDcd001671.03E-111661No hitNo description
Gene3DG3DSA:1.10.10.606.4E-2565116IPR009057Homeodomain-like
SMARTSM007171.5E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129419.44966116IPR017930Myb domain
PfamPF002491.0E-1368110IPR001005SANT/Myb domain
CDDcd001671.03E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MGRAPCCEKD SVKRGPWTPE EDAKLLACIA QHGTGSWRTL PKKAGLQRCG KSCRLRWTNY  60
LRPDLKHGRF TDHEEQLIVN LHAALGSRWS LIAAQLPGRT DNDVKNYWNT RLKKKLCEMG  120
IDPITHKPIS QLLADLAGSM ALPKGGDIAE ATLGCFKDDM LNVLMRKRPD WQSDGSNVTL  180
PNIPHGFSVG RQSWDIVAGP QSCASQPRSV IANAYDTSVN DQYNSRLTNQ NLQVDAVVQK  240
FKYSLSRAGQ TNEMQRVGDV LKPREDSMSR NTALVSGRFY RGECGSPGTA TGGANSSIPN  300
LQYPCMADAP HMLTALLCNQ KGTSSRSHCQ ETPSTNTNVP TSCEIEPWSP SPSGSSCSNT  360
SLVNGDVAGL EKVLNSDVFL WDFSELGSIM S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27141167108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401239.10.0transcription factor MYB80-like
TrEMBLA0A2K1J4Q50.0A0A2K1J4Q5_PHYPA; Uncharacterized protein
STRINGPP1S36_198V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.12e-88myb domain protein 103