PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_1780V3.8.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | GRF | ||||||||
Protein Properties | Length: 752aa MW: 78721.5 Da PI: 8.4214 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.7 | 4.9e-24 | 238 | 281 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRC r+v++++k+CErH+hrgr+rsr++ e Pp3c17_1780V3.8.p 238 DPEPGRCRRTDGKKWRCARDVVPDQKYCERHMHRGRHRSRRPAE 281 79**************************************9876 PP | |||||||
2 | QLQ | 54.8 | 2.8e-19 | 173 | 208 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT +Q+++L++Q+l++Ky++a++ vP+eLl +i+k Pp3c17_1780V3.8.p 173 PFTTSQWAELEHQALIFKYMMAGVNVPQELLNPIRK 208 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.2E-10 | 172 | 208 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.542 | 173 | 208 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.8E-14 | 173 | 207 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.77 | 238 | 282 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.0E-20 | 239 | 279 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 752 aa Download sequence Send to blast |
MHTMSSPNSP GSLSPNNHLS SSKHCRSASE MDLEDRRGGG PLKMARTDSF HRQSDLKMHM 60 NGSPSGTMVL SSSMVSDGRL GCSPTNSCAS DGSLLGNDHG NVVSDARLLR QDSLVSASTY 120 SGGQGCGRPL SYHHLQSSAY HYKPSGGGLS MGRENMNHMG QSVHNPVSGA RAPFTTSQWA 180 ELEHQALIFK YMMAGVNVPQ ELLNPIRKSV ATMNSLSSHH TTNLVWGAFH LGVPNNTDPE 240 PGRCRRTDGK KWRCARDVVP DQKYCERHMH RGRHRSRRPA EGQTSSASQS GSATSSGPQP 300 AIAVGASRTS TPTPGSSLTH SNLRPSILSG NSQSTPNLGG GGMGYNSPGG SGGLSGGSSP 360 AASSGQFQLP GLSSAAGTSG LTSKDYRYMN GMTVKSEMGM GPEQILFSEA SGSTRGLSQE 420 AQSLSNLSRL NTTMNKSWQT MTSSKVLPAA QPKGSGNSSL LSYNSSQMGG LLGQEFGLMP 480 EASQVNLAAM AASQQQHSFL SNGYGGVEST SVGRESSEGQ PLRHFFDDWP RSRDPSALAW 540 GSDVEDSDRT TSAGRGGQSN HTSNNTQLSI SIPMTAAPSG DFNSQSSGGS PSRGKLSLSP 600 LKLSISRAGD ASSDIGVGSG NVWVECHYDR HRHTTWDSIS WKPTLVGGPL AEVQQSGSNN 660 LIVGGGGGGG VGGDGSDLNL LADEWFNYHC KKSSFSVQIL PSDHVASPVD VLQRSTFASP 720 YDSSCSNSSA SSPRSTVPLD PASVTSESKT V* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.2239 | 0.0 | protonema |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024400506.1 | 0.0 | growth-regulating factor 6-like isoform X1 | ||||
Refseq | XP_024400507.1 | 0.0 | growth-regulating factor 6-like isoform X1 | ||||
TrEMBL | A0A2K1J2E5 | 0.0 | A0A2K1J2E5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S344_39V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 1e-33 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_1780V3.8.p |