PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_1730V3.1.p
Common NamePHYPADRAFT_226091
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB
Protein Properties Length: 678aa    MW: 76145.4 Da    PI: 7.2553
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_1730V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07484524340
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                        +W+++E +ll +av+++++g   +W+ Ia++m   R++ ++
  Pp3c17_1730V3.1.p 484 PWSKQEVDLLRKAVQKFPKGtsqRWEVIANYMRSSRSADEI 524
                        8*******************************988888776 PP
2Myb_DNA-binding21.65e-07621664344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                         W++  +  lv+a+k ++++   +W++Ia  ++ g++  qc  ++
  Pp3c17_1730V3.1.p 621 EWSEAQEVALVNAIKAFPKDtvnRWDRIATSVP-GKSKAQCLKKF 664
                        7********************************.*******8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465655.5E-2185175IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.6E-2094200IPR001623DnaJ domain
SMARTSM002715.4E-1696171IPR001623DnaJ domain
CDDcd062571.26E-1297168IPR001623DnaJ domain
PROSITE profilePS5007618.0397179IPR001623DnaJ domain
PfamPF002265.8E-1797176IPR001623DnaJ domain
PRINTSPR006257.2E-7102120IPR001623DnaJ domain
PRINTSPR006257.2E-7120135IPR001623DnaJ domain
PRINTSPR006257.2E-7151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.586477532IPR017877Myb-like domain
SMARTSM007173.0E-6481534IPR001005SANT/Myb domain
SuperFamilySSF466897.1E-8483527IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-5483524IPR009057Homeodomain-like
CDDcd001674.08E-5484526No hitNo description
PfamPF002496.2E-7484524IPR001005SANT/Myb domain
SMARTSM007174.9E-7618670IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-9619667IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-4620664IPR009057Homeodomain-like
CDDcd001671.43E-5621664No hitNo description
PfamPF002499.4E-6621664IPR001005SANT/Myb domain
PROSITE profilePS500906.76622668IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MPGREDRLSI TYFAADIPEV LPEYVASNNK CYPRVGLEPA GMCFHEAAKR TVGVNTKPAE  60
EEEEVVPDTK DKESDSPSAD SYGFKGKKSG DGAENQDHYA LLGLSHLRFL ATEDQIRKSY  120
REAALKHHPD KHAALLLTEE TEEKKEIKKD EIDQHFKAIQ LAYEVLIDPV KRRAYDSTDE  180
FDDEVPSDCA PGDFFKVFGS VFARNARWST IQPVPFLGDN DTDMASVDSF YDFWWSFKSW  240
REFPHADDFD LEEAESREHK RWMERQNAKL REKARKEENA RIRLLTDNAY KKDPRIIARK  300
EMEKAEKLRK KQAKSQARRE KEEEAARALE EERLRKEEED RKAAEEASAL KKLKEKEKKL  360
LRREKARLRG LTASAVAKGC GISDSDVDMF CTSLEISRLR GLCEKLEGMG DVEEQVEYLR  420
KVISGEEMII SSDSAATGTP TRVNSSPSMC TLDATPSKTH AKKTSERVAE KVKRTSTPVT  480
EERPWSKQEV DLLRKAVQKF PKGTSQRWEV IANYMRSSRS ADEIVKAVKT VLVQKPNSSK  540
AFDSSLQKNT GNVVTDSPLL TKENEGGYPQ TCNGTAGGEK SQENGASGRR RENGAELKNV  600
TPGIAQSDGT VPNGGPAEGE EWSEAQEVAL VNAIKAFPKD TVNRWDRIAT SVPGKSKAQC  660
LKKFAGLRDS FRSSKKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1619329620123Zuotin
5dje_B1e-1619329620123Zuotin
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.70510.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401147.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_024401148.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_024401149.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_024401150.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_024401151.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A2K1J2F60.0A0A2K1J2F6_PHYPA; Uncharacterized protein
STRINGPP1S344_48V6.20.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP38231521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.21e-160DnaJ domain ;Myb-like DNA-binding domain
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]