PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_15380V3.1.p
Common NamePHYPADRAFT_165916
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 423aa    MW: 46170.3 Da    PI: 6.4254
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_15380V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.49.6e-07292333955
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r RR+ri ++   L+  +P       +K++ a++L +A++Y+k Lq
  Pp3c17_15380V3.1.p 292 ARHRRERISDRVRVLQHFVPGG-----TKMDTASMLDEAIHYVKFLQ 333
                         699*****************87.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.443283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.30E-11285337No hitNo description
Gene3DG3DSA:4.10.280.101.9E-12286341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-13287343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-12289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MSLTFRADEC NELQSMENWL NAGTSWSEHH GIVDVETTAS APLFNHIAEA SSTRGSPESL  60
FDALRKGKEE IPTHTTFLKL DTVELCKDNP DAVFMKAGSS SMVGSSSNEE EVSVLTNILP  120
SFGVSVSTMA DRTPSLDEPV LCVDAKSPRE PLSPGALQLR KSPSRASTKR SFVDASEASW  180
MPVADAQQSR TQHPVKQKQP KNGMLSQEEI QSPPAAIAYG PPFVGMSTSG EMATLAIPNP  240
TAFLPGSAAN VAPLLFSTPL TLPNVPSMEE IVQLRPKRRN VRISKDPQSV AARHRRERIS  300
DRVRVLQHFV PGGTKMDTAS MLDEAIHYVK FLQQQLQTLE RIGNMSDPRF MTQPGGPMIL  360
PQVGASTSMR PFDLNCAVYQ SNPATTMTLP PSHQQPLPWP NTRVSNSFCS SFLDSAQEQF  420
CY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.45420.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401347.10.0uncharacterized protein LOC112294765
RefseqXP_024401348.10.0uncharacterized protein LOC112294765
RefseqXP_024401349.10.0uncharacterized protein LOC112294765
TrEMBLA0A2K1J4240.0A0A2K1J424_PHYPA; Uncharacterized protein
STRINGPP1S98_202V6.30.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.15e-27bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]