PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_14230V3.2.p
Common NamePHYPADRAFT_165882
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family DBB
Protein Properties Length: 337aa    MW: 35791.4 Da    PI: 6.6099
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_14230V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.77.4e-06446541
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                         C+ +e++++   C  ++  lC +C +  H        H +vp
  Pp3c17_14230V3.2.p  4 QCDVCEKNKAAVMCCADEAALCTSCDTRVHAAnklankHVRVP 46
                        7******99*********************6577888887777 PP
2zf-B_box32.91.3e-105294238
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                        e+++C+ ++ek+  +fC +++ llC+dC +++H+       H+
  Pp3c17_14230V3.2.p 52 EPPRCDICQEKPGFFFCLEDRALLCRDCDVSIHSAnklssnHQ 94
                        579******************************6556666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.4E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.983147IPR000315B-box-type zinc finger
CDDcd000216.51E-8347No hitNo description
SuperFamilySSF578452.23E-54789No hitNo description
SMARTSM003364.8E-195198IPR000315B-box-type zinc finger
PROSITE profilePS501199.2295198IPR000315B-box-type zinc finger
PfamPF006439.9E-95394IPR000315B-box-type zinc finger
CDDcd000214.14E-125498No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MRVQCDVCEK NKAAVMCCAD EAALCTSCDT RVHAANKLAN KHVRVPLVGQ LEPPRCDICQ  60
EKPGFFFCLE DRALLCRDCD VSIHSANKLS SNHQRFLLTG TRVGLDSISG QEGAEVVLEE  120
SPRVPTPSTA TSTLPSISKS TLSSGSKLKD NSQPVPANAT PTPNPSWLTN GGRNSERAKI  180
KSKPVGTTSA NVSDPHGSSF GKRNSIPADF LSDAVPVWGV DELLNLPELA EGYHIGDIGS  240
SKADMNNLGD YDWMADLSMF EEQMYAAGSF HEVPQLSAPA PTVGLTRGGR ATALSKGKGK  300
QDAAIVPQFD DAFVVPDLGL SVSPSSPAPV TKRRRT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.52560.0gametophore| protonema| sporophyte
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401288.10.0B-box zinc finger protein 24-like
RefseqXP_024401289.10.0B-box zinc finger protein 24-like
TrEMBLA9SNT60.0A9SNT6_PHYPA; Predicted protein
STRINGPP1S98_84V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.16e-48light-regulated zinc finger protein 1
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]