PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_13620V3.2.p
Common NamePHYPADRAFT_81770
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 352aa    MW: 40116.9 Da    PI: 4.1582
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_13620V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000312850123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y C+ Cg +F++  +L  H+++H
  Pp3c17_13620V3.2.p 28 YMCKVCGNHFNSGQSLGGHMNVH 50
                        89*******************99 PP
2AP252.71.1e-1684133153
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                         +++kGVr++k ++rWvAeIr p+    + k+++lg++ t+ eAa a++ a k++
  Pp3c17_13620V3.2.p  84 TQFKGVRYRKEQNRWVAEIRPPR----SsKTWWLGTYSTPTEAAYAYDVAIKYF 133
                         579******************84....35********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-62554No hitNo description
Gene3DG3DSA:3.30.160.602.6E-42753IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.8E-72851IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.5312855IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
CDDcd000181.00E-1684142No hitNo description
PROSITE profilePS5103215.36985145IPR001471AP2/ERF domain
PfamPF008478.4E-1185133IPR001471AP2/ERF domain
SMARTSM003808.5E-1685148IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1485142IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-1885142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MARMFNSSDN YGYSSSDCPS SNSHRRTYMC KVCGNHFNSG QSLGGHMNVH RNDRRSPSNC  60
QYNRSKGSPT YSSPGAGSGD ECSTQFKGVR YRKEQNRWVA EIRPPRSSKT WWLGTYSTPT  120
EAAYAYDVAI KYFGSETSLN FDGHPVYDQI PTISTTMPKD FAMQLREVVK KYGKLAMQSD  180
GSGRASFSFG NAYNPYETYP PPYTCASNDV DSDDGEDDEE EEEEEEQEEQ EEMEEEVEQE  240
DEGQPVQEEE NWENYVNFPR NQTTEQSLDD HAPIDNEQTP TSIFDAADLN AFNGASYPPQ  300
HSSFTMDYDL STYNYCFSPP QHPFLSDYDY NCGTYQPQAQ FWSQSYQYSS Y*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400289.10.0ethylene-responsive transcription factor ERF114-like
TrEMBLA0A2K1J3T10.0A0A2K1J3T1_PHYPA; Uncharacterized protein
TrEMBLA9SNQ10.0A9SNQ1_PHYPA; Predicted protein
STRINGPP1S98_22V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.17e-15ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]