PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_13550V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | GRAS | ||||||||
Protein Properties | Length: 817aa MW: 90944 Da PI: 5.4776 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 376.3 | 3.9e-115 | 440 | 808 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 ++lL++cA+av++g++ a++l+++l+e++s +g+ qR+a+yf+eAL a++++++ +ly+al+ ++ s +++ l+al lf e +P+++ Pp3c17_13550V3.1.p 440 TNLLIRCAHAVEQGNFGYANELINELREHSSAYGNGRQRMAHYFVEALVAKMSGTGGQLYSALSNNRPS---EAQMLKALMLFCEHCPFIQ 527 789************************************************************999888...899999************* PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 + h+ aN+ I+ea++g++rvHiiD++i +G+QWp+Ll +L++Rpegpp+lRiTg+++p++g + +++ tg+rLak+A+++gvpf+f++ Pp3c17_13550V3.1.p 528 VPHIFANHSIVEAFKGASRVHIIDYGILYGVQWPCLLYQLSTRPEGPPHLRITGIDRPQPGfrPSARIQDTGRRLAKLAKKMGVPFKFHA- 617 **************************************************************9***************************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 +a+++e++++ +L ++++E+laVn++++ +lldesv+ +s+r+ vL+ +ksl+Pkv+v +a +n++ F+ rf eal+++s++fd++e Pp3c17_13550V3.1.p 618 IAEKWEAITPAHLLLREDEVLAVNCMFRFRHLLDESVTAASPRNLVLSRIKSLNPKVFVQGVFNAGYNAPFFMSRFREALSHFSTIFDAME 708 7****************************************************************************************** PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 +++p+++ +r+ +++e++grei nvvaceg er+er+et+++W++r ++aGF+++p s ++++++k+ +r ++ d y v ++ +++++gWk Pp3c17_13550V3.1.p 709 SSFPPDHVDRQLIDHEIVGREILNVVACEGLERVERTETYRQWQARTTRAGFQQIPSSGETMAKIKMAMRVYHRD-YGVGHDGHWFLIGWK 798 *************************************************************************66.*************** PP GRAS 364 drpLvsvSaW 373 ++ +++ W Pp3c17_13550V3.1.p 799 NHITHAMTIW 808 ***9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.223 | 413 | 790 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-112 | 440 | 808 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 817 aa Download sequence Send to blast |
MIIAMAGSKH ERTEGSGGAG EGPSLAAQLQ QVWLQTQMPK AQKRSFTPDS STQNQIPRLS 60 TSNLGADTSA LSKPSALSAL KSLSNLFPEL ANVQEEKKAI ISSVFKEGEH PVALNPAMLQ 120 KKNECLEMML TDNFGNEAQS ERSQVSHSRT SSQTMRSNSY GIQPSSDSLD FSSMCPLTSF 180 NSFSGSTQRS AVDTPEEDFF CPFGRSEPSD SPSVDNTEAT AEVEVAVELE KTPLFLYLTD 240 MLMDEKVEEK KCMFVEMSAY QAMAKELGDL ISYDPSYSSM PGAENTNSEF HFEDNSGLFE 300 KEYLEFQGEE DVVEDVGHVD SWINEILSGP LPPELRDSPD SETKHGHKHA ESPEESCSNA 360 DSEFCSCNTL KDEDFEVAQH HWAYVQANGS YLDSSSSLLD SVNSAHSLQN KNGRMLPVGF 420 TNPISSSNGN EVHVTPVDLT NLLIRCAHAV EQGNFGYANE LINELREHSS AYGNGRQRMA 480 HYFVEALVAK MSGTGGQLYS ALSNNRPSEA QMLKALMLFC EHCPFIQVPH IFANHSIVEA 540 FKGASRVHII DYGILYGVQW PCLLYQLSTR PEGPPHLRIT GIDRPQPGFR PSARIQDTGR 600 RLAKLAKKMG VPFKFHAIAE KWEAITPAHL LLREDEVLAV NCMFRFRHLL DESVTAASPR 660 NLVLSRIKSL NPKVFVQGVF NAGYNAPFFM SRFREALSHF STIFDAMESS FPPDHVDRQL 720 IDHEIVGREI LNVVACEGLE RVERTETYRQ WQARTTRAGF QQIPSSGETM AKIKMAMRVY 780 HRDYGVGHDG HWFLIGWKNH ITHAMTIWEP IRDGSP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-52 | 445 | 810 | 25 | 380 | Protein SCARECROW |
5b3h_A | 9e-53 | 445 | 810 | 24 | 379 | Protein SCARECROW |
5b3h_D | 9e-53 | 445 | 810 | 24 | 379 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.2241 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024400152.1 | 0.0 | scarecrow-like protein 11 | ||||
Refseq | XP_024400154.1 | 0.0 | scarecrow-like protein 11 | ||||
TrEMBL | A0A2K1J3R7 | 0.0 | A0A2K1J3R7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S98_14V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-130 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_13550V3.1.p |