PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_13070V3.1.p
Common Namem7, PHYPADRAFT_235342, PPM7
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family M-type_MADS
Protein Properties Length: 439aa    MW: 49786.4 Da    PI: 9.1209
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_13070V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.53.1e-27959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+ien +nrqvt+skRrng++KKA+ELSvLCd++ a+i+fs++gkl  ys+
  Pp3c17_13070V3.1.p  9 KKIENPTNRQVTYSKRRNGLIKKAYELSVLCDIDLALIVFSPSGKLTQYSN 59
                        68***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.282161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-31288IPR002100Transcription factor, MADS-box
CDDcd002657.85E-37271No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.958137246IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MGRVKLEIKK IENPTNRQVT YSKRRNGLIK KAYELSVLCD IDLALIVFSP SGKLTQYSNC  60
SIEDVISRFA NLPMHERNKS FEDMLTRFAN FHMHHDRTKY NRKIENLEYL HKSLKKLNGE  120
KDSASNQLLL GNKGYEVGLL QEELKKSQQE KELVQQRARL YLADEQLLQN VTSVQQLANM  180
ETELEQALER VRARKSYVSS AYQVSSAMQR QQHEFLGNSY QQMMVLRQQQ AHQHHHQQQQ  240
QQQQKAQHQH QQQGGIPAAA QQLPFLQWNG AQERPEATLQ DFMEQQTNTS QAIVPSQMSR  300
EVVSQREVSP SNNGFFPGTA SQSTLHNLGQ IGQLVGANRG ISMHDMALEQ RGGQHEEQKK  360
AKLEITKNMG FASSSSSGGA AAEGSAETNL NQTFNNQTEQ VHGNANASNW HQANHQAQAY  420
INSQYPNGFF NQNADAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A6e-17269168Myocyte-specific enhancer factor 2A
3mu6_B6e-17269168Myocyte-specific enhancer factor 2A
3mu6_C6e-17269168Myocyte-specific enhancer factor 2A
3mu6_D6e-17269168Myocyte-specific enhancer factor 2A
6byy_A9e-17185185MEF2 CHIMERA
6byy_B9e-17185185MEF2 CHIMERA
6byy_C9e-17185185MEF2 CHIMERA
6byy_D9e-17185185MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8713700.0AJ871370.1 Physcomitrella patens mRNA for putative MADS-domain transcription factor (m7 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024399783.10.0agamous-like MADS-box protein AGL104 isoform X2
TrEMBLQ4W1W90.0Q4W1W9_PHYPA; MIKC MADS-domain protein PPM7
STRINGPP1S313_41V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.15e-34AGAMOUS-like 104
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]