PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_12760V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family SBP
Protein Properties Length: 1308aa    MW: 143135 Da    PI: 5.5314
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_12760V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.21.5e-40213290178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cqv+gC+adls+ak+yhrrhkvCe+hskap++lvs ++qrfCqqCsrfh l++fDe+krsCrrrLa+hn+rrrk+q+
  Pp3c17_12760V3.3.p 213 TCQVDGCTADLSRAKDYHRRHKVCEAHSKAPTTLVSRVRQRFCQQCSRFHPLDKFDEDKRSCRRRLAGHNKRRRKTQP 290
                         6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-33206275IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.086211288IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-37212292IPR004333Transcription factor, SBP-box
PfamPF031109.6E-31214287IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.38E-610471186IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.4E-810711191IPR020683Ankyrin repeat-containing domain
CDDcd002044.30E-610711201No hitNo description
PROSITE profilePS502979.19811291201IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1308 aa     Download sequence    Send to blast
MDRDLGQITV EGLPVKQHQF FPGGGIQQLP PNGRDMSAVD RSTESSWSSR QTGTHWDNSH  60
PQEGGGRSIN RSDWNANSWR WDGAALSAQR ISRTPHGSGL DSSRDVTHRE NGRQRGSADL  120
GLQLDVRATG TAEPNHQVIH IDDDETEVQG QTFFGRHTPS PPSNEPNPYN RGDESPEDDG  180
PLSLKLGGSS YAYEHNGAGK RPRSSSPQSQ IPTCQVDGCT ADLSRAKDYH RRHKVCEAHS  240
KAPTTLVSRV RQRFCQQCSR FHPLDKFDED KRSCRRRLAG HNKRRRKTQP DAPTPRVEDQ  300
AGVKNSDLLA LLGMYSQLRG PLEQPSAAAA ANDQDILLQC LRQAGNLNLP NSTLEGLTRA  360
ASSWNQLTRN SDLAPPQIDP RLLASQLTGH APQQLAPQDA LAMLLQNNLK HAARMAQENI  420
YGRAGFNGNM NGGPLPYPVS SADASVSHAV PQINNERTPS APGLSLPSSL RVPGIVPGAL  480
DPAQLLTSIA LSLHSSLAAQ TASPGLAANG YGMAQSAMQA HPEQTSIDTR NLNLRFDRNQ  540
ENAPSVHSQV GRQRQSTQNG VSHPHKRSFL DLQQSQAPLQ RPSIDLQQPP PSEQYSDASE  600
TGSGSGSGSG SGVGSDHQSP GTPNRDLENS RISFKLFDKH PTQFPEGLRS QIDEWLAHRP  660
SDMEGFIRPG CIILTIYLSM PKSAWTELID DLPESLRRLL RTGCEFWCTG RMLVQVDRQS  720
VLVVDGEIIS CRTSSPFESP CLLSVRPLAV VTGQQNRLTV KGFNLTRAAT RLLCAFRGKY  780
FSEEIYQQHH TYEESVASVD ETETETEVTS NSSVGGCGAS RNEENEALDL VNVESSSADE  840
EHVSYRPSSL SALSEVERLS GVGTDLSEQE DSTGGRDGFV SDIDLGHNLH TDVGTNLSSS  900
QAVFNLDIST FPSTMEAGSF GRCFIEVDQD TLEGNWKPVI VADKLVAAEI STLEDEIETA  960
ALIAGRLAEQ HGFDPFVVLY CTELARLAEE EDVTRFLSEL GWFFQRSYFR YLNFSSPSTQ  1020
MFSTRLKQLL VYSVERNWCA VVEKVLDTAF ENDDWEATFL ELSDMPQEEV SLLHRAVRNK  1080
NRPMVELLLG FAPSFLAGIN DPNVESFKQK LEFRLKWSLI FKPDMGGPAG LTPLHVAASM  1140
HDAEDIVDAL TSDPCQAGLH AWFHKEDASG ATPLSLAKAG GNVKSLQVVR AKLALLENPN  1200
SVISDIAPGW DHRSADSIVQ IVELPHWIPS TGADPAVSRP DESPTCREVD FARLPRDVCG  1260
VKGGLYRPFL VSIMGIACIC VCVCLLLRGP QNVLPLFTWS GLEQGKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-31205287284squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ9684030.0AJ968403.1 Physcomitrella patens mRNA for squamosa promoter binding protein 2 (SBP2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400716.10.0squamosa promoter-binding-like protein 14
RefseqXP_024400717.10.0squamosa promoter-binding-like protein 14
RefseqXP_024400719.10.0squamosa promoter-binding-like protein 14
TrEMBLA0A2K1J3N30.0A0A2K1J3N3_PHYPA; Uncharacterized protein
STRINGPP1S313_76V6.20.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.19e-38squamosa promoter-binding protein-like 12