PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_12760V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | SBP | ||||||||
Protein Properties | Length: 1308aa MW: 143135 Da PI: 5.5314 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.2 | 1.5e-40 | 213 | 290 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC+adls+ak+yhrrhkvCe+hskap++lvs ++qrfCqqCsrfh l++fDe+krsCrrrLa+hn+rrrk+q+ Pp3c17_12760V3.1.p 213 TCQVDGCTADLSRAKDYHRRHKVCEAHSKAPTTLVSRVRQRFCQQCSRFHPLDKFDEDKRSCRRRLAGHNKRRRKTQP 290 6**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-33 | 206 | 275 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.086 | 211 | 288 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.88E-37 | 212 | 292 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.6E-31 | 214 | 287 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 1.38E-6 | 1047 | 1186 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 6.4E-8 | 1071 | 1191 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.30E-6 | 1071 | 1201 | No hit | No description |
PROSITE profile | PS50297 | 9.198 | 1129 | 1201 | IPR020683 | Ankyrin repeat-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1308 aa Download sequence Send to blast |
MDRDLGQITV EGLPVKQHQF FPGGGIQQLP PNGRDMSAVD RSTESSWSSR QTGTHWDNSH 60 PQEGGGRSIN RSDWNANSWR WDGAALSAQR ISRTPHGSGL DSSRDVTHRE NGRQRGSADL 120 GLQLDVRATG TAEPNHQVIH IDDDETEVQG QTFFGRHTPS PPSNEPNPYN RGDESPEDDG 180 PLSLKLGGSS YAYEHNGAGK RPRSSSPQSQ IPTCQVDGCT ADLSRAKDYH RRHKVCEAHS 240 KAPTTLVSRV RQRFCQQCSR FHPLDKFDED KRSCRRRLAG HNKRRRKTQP DAPTPRVEDQ 300 AGVKNSDLLA LLGMYSQLRG PLEQPSAAAA ANDQDILLQC LRQAGNLNLP NSTLEGLTRA 360 ASSWNQLTRN SDLAPPQIDP RLLASQLTGH APQQLAPQDA LAMLLQNNLK HAARMAQENI 420 YGRAGFNGNM NGGPLPYPVS SADASVSHAV PQINNERTPS APGLSLPSSL RVPGIVPGAL 480 DPAQLLTSIA LSLHSSLAAQ TASPGLAANG YGMAQSAMQA HPEQTSIDTR NLNLRFDRNQ 540 ENAPSVHSQV GRQRQSTQNG VSHPHKRSFL DLQQSQAPLQ RPSIDLQQPP PSEQYSDASE 600 TGSGSGSGSG SGVGSDHQSP GTPNRDLENS RISFKLFDKH PTQFPEGLRS QIDEWLAHRP 660 SDMEGFIRPG CIILTIYLSM PKSAWTELID DLPESLRRLL RTGCEFWCTG RMLVQVDRQS 720 VLVVDGEIIS CRTSSPFESP CLLSVRPLAV VTGQQNRLTV KGFNLTRAAT RLLCAFRGKY 780 FSEEIYQQHH TYEESVASVD ETETETEVTS NSSVGGCGAS RNEENEALDL VNVESSSADE 840 EHVSYRPSSL SALSEVERLS GVGTDLSEQE DSTGGRDGFV SDIDLGHNLH TDVGTNLSSS 900 QAVFNLDIST FPSTMEAGSF GRCFIEVDQD TLEGNWKPVI VADKLVAAEI STLEDEIETA 960 ALIAGRLAEQ HGFDPFVVLY CTELARLAEE EDVTRFLSEL GWFFQRSYFR YLNFSSPSTQ 1020 MFSTRLKQLL VYSVERNWCA VVEKVLDTAF ENDDWEATFL ELSDMPQEEV SLLHRAVRNK 1080 NRPMVELLLG FAPSFLAGIN DPNVESFKQK LEFRLKWSLI FKPDMGGPAG LTPLHVAASM 1140 HDAEDIVDAL TSDPCQAGLH AWFHKEDASG ATPLSLAKAG GNVKSLQVVR AKLALLENPN 1200 SVISDIAPGW DHRSADSIVQ IVELPHWIPS TGADPAVSRP DESPTCREVD FARLPRDVCG 1260 VKGGLYRPFL VSIMGIACIC VCVCLLLRGP QNVLPLFTWS GLEQGKE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-31 | 205 | 287 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ968403 | 0.0 | AJ968403.1 Physcomitrella patens mRNA for squamosa promoter binding protein 2 (SBP2 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024400716.1 | 0.0 | squamosa promoter-binding-like protein 14 | ||||
Refseq | XP_024400717.1 | 0.0 | squamosa promoter-binding-like protein 14 | ||||
Refseq | XP_024400719.1 | 0.0 | squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A2K1J3N3 | 0.0 | A0A2K1J3N3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S313_76V6.2 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60030.1 | 9e-38 | squamosa promoter-binding protein-like 12 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_12760V3.1.p |