PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c17_12730V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB

Protein Properties

Length: 848aa MW: 95268.7 Da PI: 6.6825

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c17_12730V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.5	2e-15	373	419	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd l+++vk++G +W++Ia+++ gR +kqc++rw+++l Pp3c17_12730V3.2.p 373 KGLWTIEEDRHLIELVKRYGQQRWTLIANYLS-GRIGKQCRERWHNHL 419 678***************************.***********97 PP
2	Myb_DNA-binding	44	5.1e-14	427	467	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W+ eE+e lv +++ lG++ W+ Ia+ ++ gRt++ +k++w+ Pp3c17_12730V3.2.p 427 GWSSEEEEYLVFVHNTLGNR-WADIAKLIP-GRTENAIKNHWN 467 6*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	28.013	368	423	IPR017930	Myb domain
SuperFamily	SSF46689	8.24E-29	370	466	IPR009057	Homeodomain-like
SMART	SM00717	6.3E-14	372	421	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.7E-25	374	426	IPR009057	Homeodomain-like
CDD	cd00167	1.24E-12	376	419	No hit	No description
Pfam	PF13921	8.6E-17	376	434	No hit	No description
SMART	SM00717	2.2E-12	424	472	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	17.005	424	474	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-19	427	473	IPR009057	Homeodomain-like
CDD	cd00167	3.89E-9	428	467	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 848 aa Download sequence Send to blast
MERPDFRGPM ETKIPETVDG ETRMFIKHPD VVLTTLGNSS RPIGSCVLDQ VLDSPINFLG 60 SSLQHQILGS LRLNGVLSSS CPTSATFNFK QSSRSITGKF VTSEQEYLLQ QQGSSIGSCR 120 AQLSAAESNS VAVDNTNKAA RQDERWIGDR LLDTETFKNE LEFEQQKAKR AHLLDRQWES 180 EPHSVSTSRV WSSKRPKPSQ QQHELRSVPC PPVPRSKTTI GLYHEGPVVG HVAEYIDFEE 240 LDLQQLKDVN VTEKFQGYFC SNENPHKIVA GGGSISDRRQ KLGNTRCDDF PEKVHETVVS 300 IDQSEESLPS GSGNGLGESC HDVGGTAECN YLILPGTEPD EVFQSDPHDI DFSSKSFMNS 360 SSQRGPHRQN TIKGLWTIEE DRHLIELVKR YGQQRWTLIA NYLSGRIGKQ CRERWHNHLR 420 PDIKKEGWSS EEEEYLVFVH NTLGNRWADI AKLIPGRTEN AIKNHWNATM RRKDLRRKHR 480 RPVGGSKCGP VEPVSRCTIL RDYQQKVVAQ AKRKGNTHET TSPSNPDHFE LDQHKRLSKN 540 TCPYNTQIAG NSDTNWNTEK SEYQRLVQIK EMRSEERKQL SYTICRGGEE GDPDFSNAPQ 600 GSVVLQHGRS GSVFNQDWRN CGQYENNGMY STPPLWIPSF RGTEKSEGDS YISGGRWHVP 660 RDDVTWSQMA ADNSDAGLNQ RKIDHHTVHC LSHCNPLQQR SSESHTRFDT QGSQLENEVL 720 HSKIRGIKNV SVTLDPTSGV QMAPPAQSDC EYTDSSSPNL NMAHLTLPLN SLQNYFGDSR 780 NILTEVEPHQ LDHGVCCLPC QTLGIADLRT NLGYLSQEHW RPAAVEGRNS GNLPAAGEID 840 FIEIIAS*

Sequence ? help Back to Top

Protein Sequence Length: 848 aa Download sequence Send to blast

MERPDFRGPM ETKIPETVDG ETRMFIKHPD VVLTTLGNSS RPIGSCVLDQ VLDSPINFLG  60
SSLQHQILGS LRLNGVLSSS CPTSATFNFK QSSRSITGKF VTSEQEYLLQ QQGSSIGSCR  120
AQLSAAESNS VAVDNTNKAA RQDERWIGDR LLDTETFKNE LEFEQQKAKR AHLLDRQWES  180
EPHSVSTSRV WSSKRPKPSQ QQHELRSVPC PPVPRSKTTI GLYHEGPVVG HVAEYIDFEE  240
LDLQQLKDVN VTEKFQGYFC SNENPHKIVA GGGSISDRRQ KLGNTRCDDF PEKVHETVVS  300
IDQSEESLPS GSGNGLGESC HDVGGTAECN YLILPGTEPD EVFQSDPHDI DFSSKSFMNS  360
SSQRGPHRQN TIKGLWTIEE DRHLIELVKR YGQQRWTLIA NYLSGRIGKQ CRERWHNHLR  420
PDIKKEGWSS EEEEYLVFVH NTLGNRWADI AKLIPGRTEN AIKNHWNATM RRKDLRRKHR  480
RPVGGSKCGP VEPVSRCTIL RDYQQKVVAQ AKRKGNTHET TSPSNPDHFE LDQHKRLSKN  540
TCPYNTQIAG NSDTNWNTEK SEYQRLVQIK EMRSEERKQL SYTICRGGEE GDPDFSNAPQ  600
GSVVLQHGRS GSVFNQDWRN CGQYENNGMY STPPLWIPSF RGTEKSEGDS YISGGRWHVP  660
RDDVTWSQMA ADNSDAGLNQ RKIDHHTVHC LSHCNPLQQR SSESHTRFDT QGSQLENEVL  720
HSKIRGIKNV SVTLDPTSGV QMAPPAQSDC EYTDSSSPNL NMAHLTLPLN SLQNYFGDSR  780
NILTEVEPHQ LDHGVCCLPC QTLGIADLRT NLGYLSQEHW RPAAVEGRNS GNLPAAGEID  840
FIEIIAS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-43	370	473	4	107	B-MYB

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024400047.1	0.0	uncharacterized protein LOC112294109 isoform X1
TrEMBL	A0A2K1J3M1	0.0	A0A2K1J3M1_PHYPA; Uncharacterized protein
STRING	PP1S313_81V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	4e-44	myb domain protein 119

Link Out ? help Back to Top
Phytozome	Pp3c17_12730V3.2.p