PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_12730V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB | ||||||||
Protein Properties | Length: 848aa MW: 95268.7 Da PI: 6.6825 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2e-15 | 373 | 419 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd l+++vk++G +W++Ia+++ gR +kqc++rw+++l Pp3c17_12730V3.1.p 373 KGLWTIEEDRHLIELVKRYGQQRWTLIANYLS-GRIGKQCRERWHNHL 419 678*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 44 | 5.1e-14 | 427 | 467 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W+ eE+e lv +++ lG++ W+ Ia+ ++ gRt++ +k++w+ Pp3c17_12730V3.1.p 427 GWSSEEEEYLVFVHNTLGNR-WADIAKLIP-GRTENAIKNHWN 467 6*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.013 | 368 | 423 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-29 | 370 | 466 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-14 | 372 | 421 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-25 | 374 | 426 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.24E-12 | 376 | 419 | No hit | No description |
Pfam | PF13921 | 8.6E-17 | 376 | 434 | No hit | No description |
SMART | SM00717 | 2.2E-12 | 424 | 472 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.005 | 424 | 474 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-19 | 427 | 473 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.89E-9 | 428 | 467 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 848 aa Download sequence Send to blast |
MERPDFRGPM ETKIPETVDG ETRMFIKHPD VVLTTLGNSS RPIGSCVLDQ VLDSPINFLG 60 SSLQHQILGS LRLNGVLSSS CPTSATFNFK QSSRSITGKF VTSEQEYLLQ QQGSSIGSCR 120 AQLSAAESNS VAVDNTNKAA RQDERWIGDR LLDTETFKNE LEFEQQKAKR AHLLDRQWES 180 EPHSVSTSRV WSSKRPKPSQ QQHELRSVPC PPVPRSKTTI GLYHEGPVVG HVAEYIDFEE 240 LDLQQLKDVN VTEKFQGYFC SNENPHKIVA GGGSISDRRQ KLGNTRCDDF PEKVHETVVS 300 IDQSEESLPS GSGNGLGESC HDVGGTAECN YLILPGTEPD EVFQSDPHDI DFSSKSFMNS 360 SSQRGPHRQN TIKGLWTIEE DRHLIELVKR YGQQRWTLIA NYLSGRIGKQ CRERWHNHLR 420 PDIKKEGWSS EEEEYLVFVH NTLGNRWADI AKLIPGRTEN AIKNHWNATM RRKDLRRKHR 480 RPVGGSKCGP VEPVSRCTIL RDYQQKVVAQ AKRKGNTHET TSPSNPDHFE LDQHKRLSKN 540 TCPYNTQIAG NSDTNWNTEK SEYQRLVQIK EMRSEERKQL SYTICRGGEE GDPDFSNAPQ 600 GSVVLQHGRS GSVFNQDWRN CGQYENNGMY STPPLWIPSF RGTEKSEGDS YISGGRWHVP 660 RDDVTWSQMA ADNSDAGLNQ RKIDHHTVHC LSHCNPLQQR SSESHTRFDT QGSQLENEVL 720 HSKIRGIKNV SVTLDPTSGV QMAPPAQSDC EYTDSSSPNL NMAHLTLPLN SLQNYFGDSR 780 NILTEVEPHQ LDHGVCCLPC QTLGIADLRT NLGYLSQEHW RPAAVEGRNS GNLPAAGEID 840 FIEIIAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-43 | 370 | 473 | 4 | 107 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024400047.1 | 0.0 | uncharacterized protein LOC112294109 isoform X1 | ||||
TrEMBL | A0A2K1J3M1 | 0.0 | A0A2K1J3M1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S313_81V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 4e-44 | myb domain protein 119 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_12730V3.1.p |