PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_10170V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 319aa    MW: 34895.8 Da    PI: 8.3947
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_10170V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-192069255
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +++GVr ++ +gr++AeIrd ++    ++r++lg+f+tae+Aa+a++ a+++l+g
  Pp3c17_10170V3.2.p 20 HFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDTAEGAARAYDTAARALRG 69
                        69*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-212077IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-302077IPR001471AP2/ERF domain
SMARTSM003807.0E-372083IPR001471AP2/ERF domain
CDDcd000183.71E-312076No hitNo description
PfamPF008476.9E-122069IPR001471AP2/ERF domain
PROSITE profilePS5103222.6552077IPR001471AP2/ERF domain
PRINTSPR003673.6E-102132IPR001471AP2/ERF domain
PRINTSPR003673.6E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MTSREEKEIT KGNQTDLGVH FRGVRKRPWG RFAAEIRDPW KKTRVWLGTF DTAEGAARAY  60
DTAARALRGS KAKTNFTCPL SSEDQSTSQS STLESWSTSP TSSHNVHHPY RQYQHLLPKQ  120
QHPNCGSSAA LDTASWRSCL DLNLSAMAPI DHHVQTQDIA QAQNMRINVG HSYVSRGEVA  180
EVAHSTKRPS STPIQTLFQE SLISLKKPLI HSVPAVDVSV SQVEWSLGNS SDRNGTIVTG  240
SVTTPEMRTS SSDCDSSSSV ILNTESPETK PTSRGSSILL DLNFPPCHDE QSAVTAADNF  300
CLSRPRITAF FLKSTGRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-211882368ATERF1
3gcc_A3e-211882368ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.8450.0gametophore| protonema| sporophyte
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024399983.10.0ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2K1J3D20.0A0A2K1J3D2_PHYPA; Uncharacterized protein
STRINGPP1S105_212V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.12e-21ERF domain protein 11