PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_7710V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 471aa    MW: 50701.7 Da    PI: 8.1412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_7710V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.1e-09276323455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Pp3c16_7710V3.1.p 276 SHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 323
                        8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-16270337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.46E-11270327No hitNo description
PROSITE profilePS5088815.669272322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-16272335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-6276323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-9278328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MHAMDKLRAA MGYPHGSGLT VDPTKGGLAL QESSTQHSLQ QLSYDPIFAE RAAKYSTFGA  60
SNYPQTTYSS AFDTGRLRDV LEKESKIPRS ASFSARLGAL GTGVAQPFPG ANLKDVGDGG  120
TNGDRSPEET KLKCDQNHLN SEGVDATEGA KVSINESIEG ATPQENSSSS QQAPRSATAQ  180
RKRKGNSAAD GKGKVSSEDS KSMEAATEKT TPLKRQKSDT EDVKVVKTEQ GSASENSGDS  240
ISPRSTLKGA TSKPPQDLPK QDYIHVRARR GQATDSHSLA ERVRREKISE RMKFLQDLVP  300
GCSKVTGKAV MLDEIINYVQ SLQRQIEFLS MKLAAVNPPR LDHNYDLLSK DMLLRSRSPE  360
TTMVVSDPFA GRFGDHLQCP PMQNVSTASC NLEALYLRRS MSVPTMTSMV HSADHFSDPL  420
SQVGSSLCDG DLQSVVEMGF IQGRQGGLNL SSQVSHGSSL CLTGKLKVEL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.18252e-55gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024397773.10.0transcription factor bHLH77-like
RefseqXP_024397774.10.0transcription factor bHLH77-like
RefseqXP_024397775.10.0transcription factor bHLH77-like
TrEMBLA0A2K1J7L00.0A0A2K1J7L0_PHYPA; Uncharacterized protein
STRINGPP1S194_88V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-56bHLH family protein